Closed bartcharbon closed 1 month ago
We have variants on the chrY contig that get annotated with the "NLGN4X" gene, while this gene is located on chrX. This gene is not in the PAR regions. A similar gene "NLGN4Y" is located in the region of our variants (chrY:14,522,573-14,845,654).
Further inspection showed that the reported variant is a translocation event from X
Describe the issue
We have variants on the chrY contig that get annotated with the "NLGN4X" gene, while this gene is located on chrX. This gene is not in the PAR regions. A similar gene "NLGN4Y" is located in the region of our variants (chrY:14,522,573-14,845,654).
System