EnvGen metagenomics-workshop issues

EnvGen / metagenomics-workshop

Metagenomics Workshop

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issue with genes.to.kronaTable.py to get COG.tab file

#18 smeeta opened 2 years ago
0
Issue - ERROR could not find coverage for gene - it is possible to ignore and only annotate genes with coverage information.

#17 smeeta opened 2 years ago
0
Issue with the sample.count file

#16 mars188 opened 3 years ago
1
calculating TPM values the tpm_table.py script

#15 mars188 opened 3 years ago
0
python scripts needed minor tweaks to work on Python3.8

#14 Anto007 opened 3 years ago
2
issue with bowtie2

#13 khemlalnirmalkar opened 3 years ago
1
Reference Database

#12 JChristopherEllis opened 4 years ago
2
Created gff file using prokka 1.4 and get unexpected token newline error

#11 slvrshot opened 5 years ago
0
I cannot find the file r_commands.txt

#10 stefcamp opened 6 years ago
1
htseq counts

#9 dgkurt opened 6 years ago
0
modification of command to extract COG identifiers for prokka v1.13

#8 jennalang opened 6 years ago
2
tpm_table.py average read length does not affect TPM output

#7 caity-s opened 7 years ago
1
MEGAN commands not available

#6 luhugerth opened 7 years ago
0
Files for Comparative taxonomic analysis with R

#5 inodb closed 8 years ago
0
Add note about using bedtools 2.24.0 or later

#4 mooreryan closed 8 years ago
1
Handle missing pathways when --singlecol is not flagged

#3 mooreryan closed 8 years ago
1
Uploaded some of the files from reference_db

#2 alneberg closed 8 years ago
0
Milou merge

#1 alneberg closed 9 years ago
0