EnvironmentOntology / envo

A community-driven ontology for the representation of environments
http://www.environmentontology.org
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`idrange:26` in `src/envo/envo-idranges.owl` appears to be mangled #1511

Closed turbomam closed 3 months ago

turbomam commented 3 months ago

Missing EquivalentTo: assertion?

Duplicate definition of Datatype: idrange:26?

Duplicated usage of this range?

    EquivalentTo:
        xsd:integer[>= 3600000 , <= 3609999]
turbomam commented 3 months ago
downloads/envo-idranges.owl:
    @echo "Downloading..."
ifeq ($(shell command -v wget 2> /dev/null),)
    @echo "wget is not installed, trying with curl..."
    @curl -o $@ https://raw.githubusercontent.com/EnvironmentOntology/envo/master/src/envo/envo-idranges.owl
else
    @echo "Downloading with wget..."
    @wget -O $@ https://raw.githubusercontent.com/EnvironmentOntology/envo/master/src/envo/envo-idranges.owl
endif
Downloading...
Downloading with wget...
--2024-03-13 10:51:59--  https://raw.githubusercontent.com/EnvironmentOntology/envo/master/src/envo/envo-idranges.owl
Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.110.133, 185.199.108.133, ...
Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 5550 (5.4K) [text/plain]
Saving to: ‘downloads/envo-idranges.owl’

downloads/envo-idra 100%[===================>]   5.42K  --.-KB/s    in 0.001s  

2024-03-13 10:51:59 (10.4 MB/s) - ‘downloads/envo-idranges.owl’ saved [5550/5550]

make: Leaving directory '/home/mark/gitrepos/nmdc-ontology'

Process finished with exit code 0
turbomam commented 3 months ago
downloads/envo-idranges.owl.ttl: downloads/envo-idranges.owl
    @echo "Converting..."
    @robot convert --input $< --output $@
Converting...
INVALID ONTOLOGY FILE ERROR Could not load a valid ontology from file: envo-idranges.owl
For details see: http://robot.obolibrary.org/errors#invalid-ontology-file-error
Use the -vvv option to show the stack trace.
Use the --help option to see usage information.
make: *** [/home/mark/gitrepos/nmdc-ontology/qc.Makefile:77: downloads/envo-idranges.owl.ttl] Error 1