Open cmungall opened 8 years ago
Creating...
Does GO have classes like exudation of carbohydrates
(draft class created as ENVO_1000747)?
It would be cool if we could represent things like
phytoplankton exudation of photosyntetically-derived carbohydrates produced under stressful conditions Danavaro et al. 2009
Created as ENVO_1000746
Reading the articles suggests that we'll need support from GO process to represent this well. I'm willing to help out here as this will be of great use to us in the marine microbial ecology domain.
GO:0046903 ! secretion [DEF: "The controlled release of a substance by a cell or a tissue."]
Before adding the relevant class to GO we'd ask a few questions: is this secretion something the phytoplankton have evolved to do by some specific mechanism? Or is this an abnormal behavior? What good does secreting the carbohydrates do for them?
On 2 Jan 2016, at 11:36, Pier Luigi Buttigieg wrote:
Creating... Does GO have classes like
exudation of carbohydrates
(draft class created as ENVO_1000747)? It would be cool if we could represent things likephytoplankton exudation of photosyntetically-derived carbohydrates produced under stressful conditions Danavaro et al. 2009
Reply to this email directly or view it on GitHub: https://github.com/EnvironmentOntology/envo/issues/276#issuecomment-168422136
is this secretion something the phytoplankton have evolved to do by some specific mechanism?
In the marine realm, it's generally quite useful (helps form marine snow aggregates, protection from harmful substances which get trapped in the exopolymeric matrix, and many other functions). It can also be "abnormal" behaviour in some cases, but mostly it's quite adaptive.
It does occur in stress situations for some organisms like diatoms, but that's not necessarily abnormal.
(low priority, this is a concept I encountered recently that seems like it may be of importance, but I have no concrete use cases as this time).
'marine muchilage' appears to be a particular form of ENVO:01000158 ! marine snow
There is a poorly sourced and confusing wikipedia article here: https://en.wikipedia.org/wiki/Sea_snot (see also the Talk page)
The article may be conflating the products of different phenomena, including side-effects of oil spills and the secretions of phytoplankton.
Better sources may be:
The wikipedia page on marine snow has a lot of interesting material regarding the production of different kinds of marine snow, but it seems to be poorly sourced and the quality is not clear. However, it suggests that it may be wise to focus first on the relevant processes: https://en.wikipedia.org/wiki/Marine_snow