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EnzymeFunctionInitiative
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EST
Programs for creating Sequence Similarity Networks and wrappers for pipeline submission on a torque cluster
GNU General Public License v3.0
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Incrementally publish files
#48
1ndy
closed
3 months ago
0
Use bin for scripts
#47
1ndy
closed
3 months ago
1
45 resturcture docs
#46
1ndy
closed
3 months ago
0
Resturcture docs
#45
1ndy
closed
3 months ago
0
Rename SSN pipeline
#44
1ndy
closed
3 months ago
0
21 create ssn configs
#43
1ndy
closed
3 months ago
0
Ensure header is printed for all sequences
#42
1ndy
closed
3 months ago
0
FASTA import NaN alignment score
#41
1ndy
closed
3 months ago
0
Output empty Parquet file if CSV is empty
#40
1ndy
closed
3 months ago
0
Add POD and help to import scripts
#39
nilsoberg
closed
2 months ago
0
15 pod in sphinx
#38
1ndy
closed
2 months ago
0
20 write basic tests
#37
1ndy
closed
4 months ago
0
Update sequence ID checks to support new unknown ID format
#36
nilsoberg
opened
4 months ago
0
Neighborhood Connectivity Workflow
#35
1ndy
opened
4 months ago
0
Convergence Ratio Workflow
#34
1ndy
opened
4 months ago
0
Cluster Analysis Workflow
#33
1ndy
opened
4 months ago
0
Clarify import process command line arguments
#32
nilsoberg
closed
2 months ago
0
Implement support for adding sequences from families to import processes
#31
nilsoberg
opened
4 months ago
0
Implement support for domains in import process
#30
nilsoberg
opened
4 months ago
0
Implement sequence filtering for import processes
#29
nilsoberg
opened
4 months ago
0
Implement UniRef support in import process
#28
nilsoberg
closed
2 months ago
0
11 add sequence blast import option
#27
nilsoberg
closed
4 months ago
0
10 add accession import option
#26
nilsoberg
closed
4 months ago
0
24 draft color ssn pipeline
#25
1ndy
closed
4 months ago
0
Draft color ssn pipeline
#24
1ndy
closed
4 months ago
0
Add sequence import by Accession
#23
nilsoberg
closed
4 months ago
0
Add example EFI config file
#22
nilsoberg
closed
4 months ago
0
Create SSN configs
#21
1ndy
closed
3 months ago
0
Write basic tests
#20
1ndy
closed
4 months ago
1
Arrow empty CSV error
#19
1ndy
closed
3 months ago
0
Add FASTA sequence import option
#18
nilsoberg
closed
4 months ago
2
Use new EFI::Database module and clean up related code.
#17
nilsoberg
closed
4 months ago
0
Use new database module
#16
1ndy
closed
4 months ago
0
pod in sphinx
#15
1ndy
closed
2 months ago
0
Cleanup docs
#14
1ndy
closed
4 months ago
0
Cleanup docs
#13
1ndy
closed
4 months ago
0
Document efi.config
#12
1ndy
closed
4 months ago
1
Add Sequence BLAST Import Option
#11
1ndy
closed
4 months ago
0
Add Accession Import Option
#10
1ndy
closed
4 months ago
0
Multiplex
#9
1ndy
closed
4 months ago
0
Add FASTA import option
#8
1ndy
closed
4 months ago
0
Add script for retrieving sequences for EST using the Family option.
#7
nilsoberg
closed
4 months ago
2
Refactor sequence import
#6
1ndy
closed
4 months ago
0
4 connect new viz code to pipeline
#5
1ndy
closed
7 months ago
1
Connect new viz code to pipeline
#4
1ndy
closed
7 months ago
0
2 remove dependencies on r for dataset analysis graph creation
#3
1ndy
closed
7 months ago
0
Remove dependencies on R for dataset analysis graph creation
#2
nilsoberg
closed
7 months ago
2
Updated database build documentation.
#1
nilsoberg2
closed
5 years ago
0
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