Support simulation of EnzymeML Documents

[JR-1991]

Since we already support optimization using our Thin Layers, it would be great to extend these towards simulation. In addition, both COPASI and PySCeS are used for simulation, thus it just feels natural to add this functionality.

Tasks to be done:

• [ ] Extend COPASI Thin Layer
• [x] Extend PySCeS Thin Layer
• [ ] Add tests to validate functionality
• [ ] Add DVC support

With the opening of this PR the PySCeS implementation has already been done. I am currently working out a test from simulating an EnzymeMLDocument and using the optimize-method to validate that the correct parameters are estimated.

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[jmrohwer]

I have looked through the code and all seems good. However, it would be nice to test it on my side. @JR-1991 do you have example code implementing/testing these changes, specifically the use of generateSimulationTemplate(), that I could run through to get an idea? I could of course create something from scratch but if you have it available in any case, please share.

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