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Epigenomics-Screw / Screw

SCREW: A Reproducible Workflow for Single-Cell Epigenomics
MIT License
7 stars 7 forks source link

Docker and Quay improvements #15

Closed neksa closed 7 years ago

neksa commented 7 years ago

New quay repository

Docker updated structure and contents of containers: base and screw Ref issue #14

oneillkza commented 7 years ago

Sounds good -- I like the idea of keeping the data images separate. I'm currently in the process of downloading the Farlik 2016 data, and it's enough of a headache that I'd rather not actually provide it as a tool.

Can one use multiple Docker containers in one cwltool invocation, or do we need to combine them ourselves? (I guess it'd be OK to distribute, eg, a Farlik2016 + Screw container, along with an example workflow to use the Farlik data).