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Epigenomics-Screw / Screw

SCREW: A Reproducible Workflow for Single-Cell Epigenomics
MIT License
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Create a complete workflow for analysis of the Guo 2013 data #32

Open oneillkza opened 6 years ago

oneillkza commented 6 years ago

Description

As a bioinformatician, I would like to run the complete workflow, including generating QC plots, pairwise clustering, regional methylation, and DMR analysis on the Guo 2013 data set, in order to include it in the broader meta-analysis.

Estimate

5

Priority

SHOULD

Notes

Should be based on #30, depends on #33

http://genome.cshlp.org/content/23/12/2126 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE47343

oneillkza commented 6 years ago

Repo: https://github.com/Epigenomics-Screw/Guo_2013_example