As a biologist, I would like to run DeepCpG over single-cell DNA methylation data, in order to find imputed methylation states of unobserved CpG sites.
Estimate
5 hours.
Priority
SHOULD
Notes
DeepCpG is on GitHub. There is also a preprint manuscript.
It does both imputation of missing data and calling of differentially methylated regions; we may want to split this into two separate tools
Description
As a biologist, I would like to run DeepCpG over single-cell DNA methylation data, in order to find imputed methylation states of unobserved CpG sites.
Estimate
5 hours.
Priority
SHOULD
Notes