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EpistasisLab / scikit-mdr

A sklearn-compatible Python implementation of Multifactor Dimensionality Reduction (MDR) for feature construction.
MIT License
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Cannot read the genetic data from github scikit-mdr library #28

Open prashant-iiitd opened 1 year ago

prashant-iiitd commented 1 year ago

genetic_data = pd.read_csv('https://github.com/EpistasisLab/scikit-mdr/blob/master/data/GAMETES_Epistasis_2-Way_20atts_0.4H_EDM-1_1.tsv.gz', sep='\t', compression='gzip')

The above command is not working, error says : "BadGzipFile: Not a gzipped file (b'\n\n')"

taylorpetty commented 1 year ago

I just had the same issue. Apparently there was an error in the upload, since it's a JSON file and contains no actual data.