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EricArcher / strataG

strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.
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Error code 1 when running STRUCTURE #54

Closed vmglynn closed 2 years ago

vmglynn commented 2 years ago

Dear Eric,

Thank you for creating strataG, it is a wonderful tool.

I am trying to run STRUCTURE via your package, but I am encountering the following error:

Error in FUN(X[[i]], ...) : Error running STRUCTURE. Error code 1 returned.

Briefly, I first converted my genlight object into a gtypes object, and ran the following code for STRUCTURE mirroring the vignette's:

library(strataG)

gtypes <- genlight2gtypes(gl.rubi)

gtypes

Sys.setenv(PATH = paste("C:\Program Files (x86)\Structure2.3.4", Sys.getenv("PATH"), sep = ";"))

set.seed(1804)

sr <- structureRun(gtypes, k.range = 1:6, num.k.rep = 6)

I could not find what this error refers to, so any further guidance would be much appreciated. Thank you in advance!

vmglynn commented 2 years ago

After some tinkering, STRUCTURE ran when I amended the path as follows:

Sys.setenv(PATH = paste("C:\Program Files (x86)\Structure2.3.4\bin", Sys.getenv("PATH"), sep = ";"))