Open EricR86 opened 10 years ago
From orion.bu...@gmail.com on March 16, 2010 14:33:05
Here are the first 15 lines from the file. This was downloaded directly from UCSC:
track type=wiggle_0 name="Tag Counts" description="UW Footprints Tag Counts"
12 9.89764 13 19 14 7.88976 15 2 16 11.9055 34 4.77953
From hoffman...@gmail.com on March 16, 2010 14:47:54
While you're at it, you might as well code in ignoring browser lines. http://genome.ucsc.edu/goldenPath/help/customTrack.html#BROWSER
From hoffman...@gmail.com on August 14, 2010 09:33:11
Genomedata 1.2.2 now accepts track lines. Comment lines and browser lines are not yet accepted.
Status: Accepted
Owner: hoffman.mm
Labels: -Priority-High Priority-Medium
From orion.bu...@gmail.com on March 16, 2010 17:09:50
The wiggle parsing code in genomedata_load_data.c assumes the wiggle file will start with variableStep or fixedStep. The wiggle spec states that the first line must be a track definition line. If a standard wiggle file is presented, the loader will default to reading it in BED format and throw a large number of errors.
Original issue: http://code.google.com/p/genomedata/issues/detail?id=14