Add ITSxpress step for ITS sequence processing

ErnakovichLab / dada2_ernakovichlab

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Add ITSxpress step for ITS sequence processing #3

Open hhollandmoritz opened 2 years ago

hhollandmoritz commented 2 years ago

https://itsxpress.readthedocs.io/en/latest/readme.html#installation

https://github.com/USDA-ARS-GBRU/itsxpress

See Eric's fix: https://github.com/ewmorr/neonectria_barcoding_012220/blob/master/conda_envs/itsxpress_3p_install.md

hhollandmoritz commented 1 year ago

Since the default pipeline is 16S and I don't know how useful ITSxpress would be now that we use the Taylor primers, I'm going to back-burner this issue.