Closed msegami1 closed 8 months ago
Hi Miki :)
Nice Data Flow Map! I really liked how you made many different categories of data and specified how was each type produced. As feedback, I have three questions that could help completing the DFM:
Thanks and see you around,
Natalia
Thanks for sharing assignment 2 @msegami1! I agree with @nnadalalemany that this looks very nice and comprehensive! Well done!
The only thing I might miss are some of the file formats of the data that you're producing: assignment 3 goes a bit more into file formats so it will become more relevant there.
I think for the confidential data it is good that you're using the :H and :U/project drives - this will prevent access by any external parties. I do share @nnadalalemany question about what will be stored where - might it make more sense to just use the project drive or do you want to store some of your files/data indeed in a separate location?
And just for completeness as you mention you're using an ELN: TU Delft provides licenses for RSpace and eLABjournal. I'm not sure if you're using these already, but just wanted to make sure you're aware of them.
Hi Miki,
Very detailed data flow map. Your data is well categorized.
I have a question about the data that you will analyze based on the raw data collected from, for example, Raman Spectroscopy. How do you store the analyzed data, figures or protocols of data processing? I think you need some other softwares to make figures or other forms of data for your papers and thesis. Would that be together with the raw data?
Looking forward to your updated data flow map!
Best, Hua
Thanks for sharing assignment 3 @msegami1! Especially the data organisation part looks very well organised - well done!
Metadata
File Formats
Access/Data publication
I hope you got a spot for one of the programming workshops!
Introduction
Hi, my name is Miki Segami, I am a PhD Candidate at the Bioprocess Engineering section, part of the Biotechnology department. One of my hobbies is photography.
Describe your research in 2-3 sentences to someone that is not from your field (please avoid abbreviations)
I am working on developing a "hands-free" bioreactor with Chinese Hamster Ovary cells for the production of monoclonal antibodies (biopharmaceuticals). For this purpose, I will use Raman spectroscopy to monitor and control the concentration of different nutrients. In addition, I will use Computational Fluid Dynamic models to investigate the scaling- down and scaling-up of such bioreactor.
My research entails the following aspects:
Reflections on the importance of RDM videos
I can be a bit paranoid so the stories told in the video, like getting the laptop stolen or the building burning down, really justify my fears and motivates me to improve further how I store my data. I have never lost data like in the stories in the video, but the times where I didn't click save and the software crashed were already very bad moments for me.
What would you like to learn during this course?
The article on reproducibility really sparks my motivation to improve how I organize my data and how I keep a record of my experiments. I want to learn how to work faster and more efficient when processing large amounts of data.
Checklist assignments