Deprecated and not used variables/arguments

[vinicvaz]

The following variables are not used by the new functions but are still defined in the function definitions. Can we remove them?

• [x] files argument not being used on create_cohort_community_bag
• [x] files variable not being used on umap_vis
• [x] file argument not being used on umap_label_vis
• [x] file argument not being used on umap_vis_comm
• [x] anchor_1 argument not being used on plot_check_parameter
• [x] anchor_2 argument not being used on plot_check_parameter
• [x] num_features argument not being used on traindata_aligned
• [x] hidden_size_layer_2 argument not being used on rnn_model Lambda
• [x] epoch argument not being use on test
• [x] optimizer argument not being used on test

[bendichter]

@katiekly are you familiar with these functions? What do you think?

[katiekly]

Hi Ben, I'm not familiar with the functions except create_cohort_community_bag(). If the length of labels equals the # of sessions then that might be why 'files' isn't be used.

num_features = # of annotation points * 2. We should be using all the annotation points in the training data.

Let me loop in Kevin and Pavol as they will have better insight whether we should remove these.