EuBIC ReproducibleMSGuidelines issues

EuBIC / ReproducibleMSGuidelines

This project aims at defining a set of guidelines for reproducible mass spectrometry-based experiments.

https://eubic.github.io/ReproducibleMSGuidelines

Creative Commons Attribution 4.0 International

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Make guideline items identifiable

#36 veitveit opened 4 years ago
3
Guidelines 290: All relevant, non-default settings, such as precursor ion tolerance, fragment ion tolerance, in-silico digestion rule (ie. enzyme), allowed missed cleavages, static and variable post-translational modifications are specified

#35 mlocardpaulet opened 4 years ago
0
Guidelines 243: The protein sequence database used including the exact version/date of download (if a release version is not available) are described

#34 viikiid opened 5 years ago
3
Guidelines 140: All used software is named including the exact version and the availability

#33 viikiid closed 5 years ago
1
Typos

#32 mlocardpaulet closed 5 years ago
1
Guidelines 364: If the software supports the export of the statistical analysis steps (for example R scripts) these are submitted as supplementary data

#31 mlocardpaulet opened 5 years ago
2
Guidelines 354: Any transformation of data (e.g. log transformation) manually or as part of a software function/test is specified including the order that these transformations were performed

#30 mlocardpaulet closed 5 years ago
1
Guidelines 248: The method used to create a decoy database is specified

#29 mlocardpaulet closed 5 years ago
2
Guidelines 189: Demo data is provided for newly developed software

#28 mlocardpaulet closed 5 years ago
0
Guidelines 179: A README file is provided that specifies the system requirements, installation guide, and instructions for use

#27 mlocardpaulet closed 5 years ago
0
Guidelines 167: The operating system and its version under which the analysis was carried out is specified

#26 mlocardpaulet closed 5 years ago
0
Guidelines 121: The identifier to the genomics (e.g. GWAS or RNA-seq) dataset is cited in the manuscript

#25 mlocardpaulet closed 5 years ago
0
Guidelines 111: The Quantitative information of is made available in the HUPO-PSI standard file format mzTab.

#24 mlocardpaulet closed 5 years ago
0
Guidelines 90: For metanalysis papers, the identifiers of all reanalyzed datasets are mentioned in the manuscript

#23 mlocardpaulet closed 5 years ago
2
guidelines ordering

#22 mlocardpaulet opened 5 years ago
1
[viewer] Firefox only prints first page

#21 jgriss opened 5 years ago
0
Add css rendering for print version

#20 jgriss closed 5 years ago
1
Linked pages through top-level tabs

#19 swillems closed 5 years ago
3
Update guidelines.md

#18 ypriverol closed 5 years ago
1
We need to review best way to include references in the description

#17 ypriverol closed 5 years ago
2
Typo's

#16 swillems closed 5 years ago
2
New item: Use of Docker images

#15 jgriss opened 5 years ago
8
Update index.html

#14 ypriverol closed 5 years ago
0
Guidelines update

#13 jgriss closed 5 years ago
0
Change section item GitHub link to create new issue

#12 jgriss closed 5 years ago
1
Should guideline sections be collapsed when opening the document?

#11 jgriss closed 5 years ago
1
Fetch remaining sections from markdown file

#10 jgriss closed 5 years ago
0
It would be great to filter also by Category bold, silver and bronze

#9 ypriverol closed 5 years ago
0
It should be possible to unselect al the fields

#8 ypriverol closed 5 years ago
0
Sort items according to level

#7 jgriss closed 5 years ago
1
Add collapse all button

#6 jgriss closed 5 years ago
2
Add E-Mail link to items

#5 jgriss closed 5 years ago
0
Add TOC to viewer

#4 jgriss closed 5 years ago
0
Add field toggles to reduced menu

#3 jgriss closed 5 years ago
0
Guidelines updated first version.

#2 ypriverol closed 5 years ago
0
License Added to the Project

#1 ypriverol closed 5 years ago
0