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Euphrasiologist / nu_plugin_bio

Bioinformatics plugin for nushell.
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performance #7

Open fdncred opened 1 year ago

fdncred commented 1 year ago

I haven't tried out your plugin yet but I was reading your example performance issues and I was wondering if you've tried open some_bio_file | into df | blah? Once it's in a dataframe, I'm betting anything you do with that large files will be faster. Of course, you'll have to have dataframes installed like cargo install --path . --features=dataframe, when building off the main branch.

Euphrasiologist commented 1 year ago

I haven't tried that yet! But you are absolutely right, that should solve some speed issues. I'll give it a go and report back.