Mark kins in KS test result output

EuracBiomedicalResearch / FamAgg

This is the development version of the FamAgg Bioconductor package.

https://EuracBiomedicalResearch.github.io/FamAgg

MIT License

0 stars 2 forks source link

Mark kins in KS test result output #27

Closed the-x-at closed 3 years ago

the-x-at commented 3 years ago

A new column ksgrp is added to the Kinship sum test, which groups affected individuals by kinship. Solves issue #15.

[x] R CMD check runs successfully.

the-x-at commented 3 years ago

Was more work than I assumed. shareKinship exists in multiple locations. Documentation had to be updated. R-4.1.0 was just released with Bioconductor 3.13, also tested it there. Overall, see my commit 7f2a396 for a full list of changes. I decided to call the new parameter rmKinship, as minKinship was misleading: it removes all kins with kinship ≤ rmKinship, whereas minKinship would indicate that the value itself would still be included.