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Euro-BioImaging / BatchConvert

A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, in a parallelised manner.
MIT License
16 stars 2 forks source link

Nextflow command as a job in the cluster. #11

Open bugraoezdemir opened 10 months ago

bugraoezdemir commented 10 months ago

When the cluster mode is active, the Nextflow command should be wrapped in a shell script and sent as a job.