A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, in a parallelised manner.
MIT License
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Specify where to build the singularity container when using BatchConvert on HPC #12
It would be useful to be able to specify where the singularity image is built, where the cachedir and the tmpdir of the singularity image are located when running BatchConvert as a slurm job on a cluster.
Thank you in advance and don't hesitate to contact me if the implementation needs to be tested.
It would be useful to be able to specify where the singularity image is built, where the cachedir and the tmpdir of the singularity image are located when running BatchConvert as a slurm job on a cluster. Thank you in advance and don't hesitate to contact me if the implementation needs to be tested.