Euro-BioImaging / BatchConvert

A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, in a parallelised manner.
MIT License
16 stars 2 forks source link

No funny characters in file and folder names #14

Open tischi opened 9 months ago

tischi commented 9 months ago

Currently:

ND_20_ov000_sZ{00001-00021-1}.ome.zarr

Proposal:

ND_20_ov000_sZ00001to00021step1.ome.zarr

or

ND_20_ov000_sZ00001to00021every1.ome.zarr