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Euro-BioImaging / BatchConvert

A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, in a parallelised manner.
MIT License
16 stars 2 forks source link

Dev #27

Closed bugraoezdemir closed 7 months ago

bugraoezdemir commented 7 months ago

Changes implemented since version 0.0.3

  1. Support provided for file paths with spaces.
  2. run_conversion.py replaces batchconvert_cli.sh and construct_cli.py, uniting them.
  3. Support for single file import from s3 (parse_s3_filenames.py modified).
  4. Support for globbing filenames from s3 for one-to-one conversion (parse_s3_filenames.py modified).