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European-XFEL / h5glance

Explore HDF5 files in terminal & HTML views
BSD 3-Clause "New" or "Revised" License
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Can't see certain attributes in a scanpy generated h5ad file #40

Closed bioinfbloke closed 6 months ago

bioinfbloke commented 6 months ago

I am running h5glance to inspect an anndata object (see https://scanpy.readthedocs.io/en/stable/tutorials/index.html).

I noticed that it doesn't seem to show any detail for pandas index objects (e.g. for var_names). Could h5glance be adapted to show that?

image

takluyver commented 6 months ago

I'm not really familiar with scanpy or anndata, can you give a bit more detail on what you're looking at?

Attributes can be shown in the tree view with --attrs.

bioinfbloke commented 6 months ago

Sorry I should have RTFM that is what I was looking for!