EvaYiwenWang
commented
3 years ago Hi dikiprawisuda, thanks for using our package. I think the reason why you cannot build the vignette is that you lack the packages required for the vignette. Could you try 'devtools::install_github("https://github.com/EvaYiwenWang/PLSDAbatch", dependencies = T, build_vignettes = T)'? Let me know if the problem is solved.
dikiprawisuda
Dear developer(s), thank you for the package. I found an error when installing when turning
build_vignettes = TRUE. With it being FALSE however, there's no problem.Please find the error message as the following (after installing mixOmics): `Downloading GitHub repo EvaYiwenWang/PLSDAbatch@HEAD Skipping 1 packages not available: mixOmics √ checking for file 'C:\Users\dikip\AppData\Local\Temp\RtmpuGhFHh\remotesbe82bc482d\EvaYiwenWang-PLSDAbatch-45c4798/DESCRIPTION' ...
saving partial Rd database (533ms) E creating vignettes (4s) --- re-building 'case_studies.Rmd' using rmarkdown Registered S3 methods overwritten by 'lme4': method from cooks.distance.influence.merMod car influence.merMod car dfbeta.influence.merMod car dfbetas.influence.merMod car Loading required package: MASS Loading required package: lattice Loading required package: ggplot2
Loaded mixOmics 6.14.0 Thank you for using mixOmics! Tutorials: http://mixomics.org Bookdown vignette: https://mixomicsteam.github.io/Bookdown Questions, issues: Follow the prompts at http://mixomics.org/contact-us Cite us: citation('mixOmics')
Quitting from lines 41-48 (case_studies.Rmd) Error: processing vignette 'case_studies.Rmd' failed with diagnostics: there is no package called 'sva' --- failed re-building 'case_studies.Rmd'
--- re-building 'simulation_study.Rmd' using rmarkdown Quitting from lines 60-65 (simulation_study.Rmd) Error: processing vignette 'simulation_study.Rmd' failed with diagnostics: there is no package called 'sva' --- failed re-building 'simulation_study.Rmd'
SUMMARY: processing the following files failed: 'case_studies.Rmd' 'simulation_study.Rmd'
Error: Vignette re-building failed. Execution halted Error: Failed to install 'PLSDAbatch' from GitHub: System command 'Rcmd.exe' failed, exit status: 1, stdout + stderr (last 10 lines): E> Quitting from lines 60-65 (simulation_study.Rmd) E> Error: processing vignette 'simulation_study.Rmd' failed with diagnostics: E> there is no package called 'sva' E> --- failed re-building 'simulation_study.Rmd' E> E> SUMMARY: processing the following files failed: E> 'case_studies.Rmd' 'simulation_study.Rmd' E> E> Error: Vignette re-building failed. E> Execution halted`
Thank you.