EvansGao / EAGLE

Enhancer And Gene Learning Ensemble method
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Error occurs when I run EAGLE on my computer #1

Closed chenkenbio closed 4 years ago

chenkenbio commented 4 years ago

Hello, when I test EAGLE.pl on my computer (Ubuntu 18.04, MATLAB 2019b, perl 5), I met the following errors:

user@ubuntu:~/Github/EAGLE$ perl EAGLE.pl -E inputexample/cell_enh.bed -G inputexample/cell_gene.txt
sh: 1: cannot create ./temp/enhancer/cellenhspre.bed: Directory nonexistent
Error: Unable to open file ./Temp/enhancer/cellenhs.bed. Exiting.
Error: Unable to open file ./Temp/enhancer/cellenhs.bed. Exiting.
Error: Unable to open file ./Temp/enhancer/cellenhs.bed. Exiting.
Can't open perl script "combination.pl": No such file or directory

                                                  < M A T L A B (R) >
                                        Copyright 1984-2019 The MathWorks, Inc.
                                        R2019b (9.7.0.1190202) 64-bit (glnxa64)
                                                    August 21, 2019

Warning: Unrecognized command line option: minimize. 

To get started, type doc.
For product information, visit www.mathworks.com.

Error using textscan
Invalid file identifier. Use fopen to generate a valid file identifier.

Error in predictor (line 3)
candidatedata=textscan(fileID,'%s %f %f %f %f %f %f');

>> 

I can not figure out whether the error was due to my computer configuration or bugs in your scripts, could you give some advice?

EvansGao commented 4 years ago

Hi chenkenbio, I have updated all the files and tested them in Windows and Linux. They can work now. Please contact me if any question happens again.