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EvolBioInf / fur

Find Unique genomic Regions
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error in fur: efopen #11

Open KarthikStrange opened 1 year ago

KarthikStrange commented 1 year ago

i am facing this error while running fur, no clue where i did wrong.

Step Sequences Nucleotides Mutations (N)

-------------------------------------------------------------

Sliding window 0 0 0

error in fur: efopen, can't open /home/mrstrange/SSPD1/furDb/p.fasta.

KarthikStrange commented 1 year ago

makeFurDb -t /home/mrstrange/SSPD1/target/ -n /home/mrstrange/SSPD1/neighbour/ -d /home/mrstrange/SSPD1/furDb

Reading data...done.

Making macle index with target representative "/home/mrstrange/SSPD1/target/MK760666.1.fasta"...done.

Making BLAST database...done. make furDb executed properly

haubold commented 1 year ago

In your analysis there is no output from the sliding window step. So the next step fails. It should perhaps fail more gracefully, but there we are.