We need a bit of clean up of names. The suggested logic is that:
'indiv' is used as a prefix for functions applied at the individual (row) level, e.g. indiv_missingness().
'loci' is used as a prefix for functions at the locus (column) level, e.g. loci_missingness().
'gt' is used for functions that apply to the whole gen_tibble, e.g. gt_pca
We need to think about functions that make pairwise comparisons (e.g. ibs, king, pairwise_popfst). One option is to use the prefix `between. However, this can be ambiguous, as abetweenfunction would return a matrix that could be n x n individuals, or m by m populations. One option is to say thatbetweenfunctions return a matrix of comparisons between individuals, and thatbetweenpopis used for populations. So, we would havebetween_ibsorbetween_kingandbetween_pop_fst`.
We need a bit of clean up of names. The suggested logic is that:
indiv_missingness()
.loci_missingness()
.gt_pca
We need to think about functions that make pairwise comparisons (e.g. ibs, king, pairwise_popfst). One option is to use the prefix `between
. However, this can be ambiguous, as a
betweenfunction would return a matrix that could be n x n individuals, or m by m populations. One option is to say that
betweenfunctions return a matrix of comparisons between individuals, and that
betweenpopis used for populations. So, we would have
between_ibsor
between_kingand
between_pop_fst`.