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Evolinc / Evolinc-I

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Add an option for long read filtering/comparison. #13

Closed andrew-d-l-nelson closed 4 years ago

andrew-d-l-nelson commented 6 years ago

People should be able to run long read transcripts through Evolinc. Alternatively, they should be able to compare their short read derived lncRNAs against any long read transcripts that are available. This would be an optional argument that would provide further support for the lncRNA annotation.

andrew-d-l-nelson commented 4 years ago

If Nanopore or PacBio transcriptomes are assembled in the final step by StringTie2 (which has long read support), the output GTF is compatible with Evolinc-I. Thus I am closing this unless anyone specifically wants to be able to add a FASTA file (instead of a GTF).