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ExaScience
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elprep
elPrep: a high-performance tool for analyzing sequence alignment/map files in sequencing pipelines.
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Fix parsing bam files containing float
#24
tanakh
closed
5 years ago
2
BaseRecalibrator maxCycle
#23
ChristopheH
closed
5 years ago
2
Warning: The --sqq optional flag is set without using --bqsr.
#22
wcarre
closed
5 years ago
2
Question about the paper
#21
dolanor
closed
5 years ago
3
testing?
#20
kortschak
closed
5 years ago
2
panic: runtime error: index out of range
#19
pwwang
closed
5 years ago
5
sfm sorting problem
#18
geertvandeweyer
closed
5 years ago
7
Added option to set tmpPath for sfm
#17
geertvandeweyer
closed
5 years ago
1
corrected typos
#16
colindaven
closed
6 years ago
2
python script handing of `single-end` flag
#15
matthdsm
closed
6 years ago
3
Feature discussion: avoiding samtools calls
#14
matthdsm
closed
6 years ago
5
added MAPQ filter
#13
matthdsm
closed
6 years ago
1
Feature request: Add quality filter
#12
matthdsm
closed
6 years ago
0
Bioconda recipe
#11
matthdsm
closed
6 years ago
1
clean main func
#10
dvrkps
closed
6 years ago
1
Optional tags filter
#9
caherzee
closed
7 years ago
0
Added a filter to output perfectly mapping reads only (soft-clipping ok)
#8
leonorpalmeira
closed
7 years ago
0
error while trying to split
#7
RichardCorbett
closed
8 years ago
29
Behaviour of markduplicates wrt pairs where one read is mapped to another c'some
#6
keithj
closed
9 years ago
2
elprep split fails to split into CRAM format
#5
keithj
closed
9 years ago
1
elprep split behaviour with/without trailing slash on /path/to/output/
#4
keithj
closed
9 years ago
1
Type error for stream in parse-sam-header on sbcl 1.2.9 OSX
#3
keithj
closed
9 years ago
7
elprep drops into ldb on sbcl 1.2.9 OSX
#2
keithj
closed
9 years ago
1
"claws" dependency in .asd file not found.
#1
marcoxa
closed
10 years ago
1
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