ExcitedStates / qfit-3.0

qFit: Automated and unbiased multi-conformer models from X-ray and EM maps.
MIT License
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Explore smaller rotamer window #347

Closed stephaniewankowicz closed 9 months ago

stephaniewankowicz commented 1 year ago

We currently oversample conformations outside of rotamer wells (60 degrees on both side of the rotamer at steps of 10 degrees).

We should test reducing the width of this sampling but potentially sample more finely (will this cause more CPLEX issues?).

When exploring this with qFit EM, this reduced a lot of rotamer outliers.