Parallel ligand

[jessicaflowers]

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Description of the Change

First change was to parallelize the ligand sampling code. All sampling functions now run simultaneously. Second change was adding a --cryo_em option to qfit_ligand.py arguments.

Release Notes

Parallelize the ligand sampling and add cryo em option to qfit_ligand.py

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[stephaniewankowicz]

@jessicaflowers can you clarify how the # of threads are determined? Is it the number of searches? -- we should have this as an option (up to 4?)