compile error : mpi and netcdf

wreckdump commented 6 years ago

I am constantly getting the following message when I try to compile.

/usr/bin/ld: mppnccombine.o: undefined reference to symbol 'ncvarget' /usr/lib/libnetcdf.so: error adding symbols: DSO missing from command line

I do have netcdf and netcdf-fortran properly installed.

Thank you.

sit23 commented 6 years ago

Hi @wreckdump - this sounds like your netcdf library isn't being included by the compiler. Could you try changing your file src/extra/python/isca/templates/mkmf.template.ia64 to the version that's here: https://github.com/sit23/Isca/blob/pre_ictp_mods/src/extra/python/isca/templates/mkmf.template.ia64 and then add the following two lines to your environment file (where you would normally have the module load commands (I know you're not using them)

export NC_FORT_INC=`nc-config --fflags`
export NC_C_INC=`nc-config --cflags`

That should hopefully fix this problem.

wreckdump commented 6 years ago

Thank you for your reply!

Unfortunately, I am getting the same error. Could this be because of fortran compiler difference? I've noticed that the intel fortran compilers are mainly used in the scrips. And the compilation flags are not correct for the compiler that I am using which is gcc-fortran.

Thanks.

jamesp commented 6 years ago

There are a few issues with compiling the current master with gfortran. Try using the 'docker' branch in my fork https://github.com/jamesp/Isca/tree/docker and use src/extra/env/docker as your base for an environment file. This is configured to compile with gfortran and gcc. I'll try and get it merged into the master branch soon, it just needs a little more testing

wreckdump commented 6 years ago

Thank you.

I did try using your env file and it is still not working as following compiler flags are for intel fortran compiler not for gcc.

# FFLAGS:
#  -fpp: Use the fortran preprocessor
#  -stack_temps:  Put temporary runtime arrays on the stack, not heap.
#  -safe_cray_ptr: Cray pointers don't alias other variables.
#  -ftz: Denormal numbers are flushed to zero.
#  -assume byterecl: Specifies the units for the OPEN statement as bytes.
#  -shared-intel:  Load intel libraries dynamically
#  -i4: 4 byte integers
#  -r8: 8 byte reals
#  -g: Generate symbolic debugging info in code
#  -O2: Level 2 speed optimisations
#  -diag-disable 6843:
#       This suppresses the warning: `warning #6843: A dummy argument with an explicit INTENT(OUT) declaration is not given an explicit value.` of which
# there are a lot of instances in the GFDL codebase.

I did try to find above flags that can be used as a counter part for gcc, however, I was not successful.

Thank you.

jamesp commented 6 years ago

could you please provide the content of your environment file and the script you are trying to run?

wreckdump commented 6 years ago

Sorry for the late reply.

env file that I am using.

export GFDL_COMPILER=gfortran
export F90=mpifort
export CC=mpicc

export NC_FORT_INC=`nc-config --fflags`
export NC_C_INC=`nc-config --cflags`

What I did for my machine is that I commented out all the 'module' part of the script in compile_mppn.sh, mppnccombine_run.sh, and I've also the compilation flags in mkmf.template.ia64 located at $GFDL_BASE/src/extra/python/isca/templates

Note that I have changed the compilation flags like the following

For -safe_cray_ptr => -fcray-pointer For -r8 => -fdefault-real-8 For -stack_temps => -fstack-arrays

And for other ifort compilation flags, I am in the process of finding the counter part for the gfortran.

Also, here is the error message that I am getting.

2018-07-27 09:26:51,990 - isca - INFO - Writing path_names to '/home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/build/isca/path_names'
2018-07-27 09:26:52,096 - isca - INFO - Running compiler
2018-07-27 09:26:52,129 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/build/isca/compile.sh: line 21: module: command not found
2018-07-27 09:26:52,140 - isca - INFO - loadmodules for drybiscuit
2018-07-27 09:26:52,190 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/build/isca/compile.sh: line 23: module: command not found
2018-07-27 09:26:52,190 - isca - INFO - Compiling postprocessing tools
2018-07-27 09:26:52,208 - isca - INFO - loadmodules for drybiscuit
2018-07-27 09:26:52,748 - isca - INFO - /usr/bin/ld: mppnccombine.o: undefined reference to symbol 'ncvarget'
2018-07-27 09:26:52,748 - isca - INFO - /usr/lib/libnetcdf.so: error adding symbols: DSO missing from command line
2018-07-27 09:26:52,748 - isca - INFO - collect2: error: ld returned 1 exit status
2018-07-27 09:26:52,749 - isca - INFO - ERROR: could not compile combine tool
2018-07-27 09:26:52,751 - isca - INFO - ln: failed to create symbolic link '/home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/build/isca/mppnccombine.x': File exists
2018-07-27 09:26:52,755 - isca - INFO - ln: failed to create symbolic link '/home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/build/isca/mppnccombine_run.sh': File exists
2018-07-27 09:26:52,756 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/build/isca/path_names
2018-07-27 09:26:53,805 - isca - INFO - ................................................................................................................................................................................................... Makefile is ready.
2018-07-27 09:26:53,884 - isca - INFO - mpifort -I/usr/local/include -fcray-pointer -fdefault-real-8 -fstack-arrays -g -O2 -I/usr/include  -c   /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/atmos_param/rrtm_radiation/rrtmg_sw/gcm_model/modules/rrsw_aer.f90
2018-07-27 09:26:53,950 - isca - INFO - mpifort -Duse_libMPI -Duse_netCDF -Duse_LARGEFILE -DINTERNAL_FILE_NML -DOVERLOAD_C8 -I/usr/local/include  -I/usr/local/include -fcray-pointer -fdefault-real-8 -fstack-arrays -g -O2 -I/usr/include  -c -I/home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/include -I/home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/mpp.F90
2018-07-27 09:26:53,969 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_comm.inc:326:0:
2018-07-27 09:26:53,969 - isca - INFO - #define MPP_GATHER_1DV_ mpp_gather_real4_1dv
2018-07-27 09:26:53,969 - isca - WARNING - Warning: "MPP_GATHER_1DV_" redefined
2018-07-27 09:26:53,969 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_comm.inc:319:0:
2018-07-27 09:26:53,969 - isca - INFO - #define MPP_GATHER_1DV_ mpp_gather_int4_1dv
2018-07-27 09:26:53,969 - isca - INFO - note: this is the location of the previous definition
2018-07-27 09:26:53,969 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_comm.inc:333:0:
2018-07-27 09:26:53,969 - isca - INFO - #define MPP_GATHER_1DV_ mpp_gather_real8_1dv
2018-07-27 09:26:53,969 - isca - WARNING - Warning: "MPP_GATHER_1DV_" redefined
2018-07-27 09:26:53,970 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_comm.inc:326:0:
2018-07-27 09:26:53,970 - isca - INFO - #define MPP_GATHER_1DV_ mpp_gather_real4_1dv
2018-07-27 09:26:53,970 - isca - INFO - note: this is the location of the previous definition
2018-07-27 09:26:54,058 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_util.inc:1442:132:
2018-07-27 09:26:54,058 - isca - INFO - call mpp_error(FATAL, 'READ_ASCII_FILE: Error reading line '//trim(text)//' in file '//trim(FILENAME)//'.')
2018-07-27 09:26:54,058 - isca - INFO - 1
2018-07-27 09:26:54,058 - isca - INFO - Error: Line truncated at (1) [-Werror=line-truncation]
2018-07-27 09:26:54,058 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_util.inc:1442:132:
2018-07-27 09:26:54,058 - isca - INFO - call mpp_error(FATAL, 'READ_ASCII_FILE: Error reading line '//trim(text)//' in file '//trim(FILENAME)//'.')
2018-07-27 09:26:54,058 - isca - INFO - 1
2018-07-27 09:26:54,058 - isca - INFO - Error: Unterminated character constant beginning at (1)
2018-07-27 09:26:54,073 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit_mpi.h:90:132:
2018-07-27 09:26:54,073 - isca - INFO - call MPI_ISEND( put_data, put_len, MPI_TYPE_, to_pe, comm_tag, mpp_comm_private, request_send(cur_send_request), error)
2018-07-27 09:26:54,073 - isca - INFO - 1
2018-07-27 09:26:54,073 - isca - INFO - Error: Line truncated at (1) [-Werror=line-truncation]
2018-07-27 09:26:54,073 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit_mpi.h:90:132:
2018-07-27 09:26:54,073 - isca - INFO - call MPI_ISEND( put_data, put_len, MPI_TYPE_, to_pe, comm_tag, mpp_comm_private, request_send(cur_send_request), error)
2018-07-27 09:26:54,073 - isca - INFO - 1
2018-07-27 09:26:54,073 - isca - INFO - Error: Invalid form of array reference at (1)
2018-07-27 09:26:54,079 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:54:132:
2018-07-27 09:26:54,079 - isca - INFO - subroutine MPP_TRANSMIT_2D_( put_data, put_len, to_pe, get_data, get_len, from_pe, block, tag, recv_request, send_request )
2018-07-27 09:26:54,079 - isca - INFO - 1
2018-07-27 09:26:54,079 - isca - INFO - Error: Line truncated at (1) [-Werror=line-truncation]
2018-07-27 09:26:54,079 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:54:131:
2018-07-27 09:26:54,079 - isca - INFO - subroutine MPP_TRANSMIT_2D_( put_data, put_len, to_pe, get_data, get_len, from_pe, block, tag, recv_request, send_request )
2018-07-27 09:26:54,079 - isca - INFO - 1
2018-07-27 09:26:54,079 - isca - INFO - Error: Unexpected junk in formal argument list at (1)
2018-07-27 09:26:54,079 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:55:61:
2018-07-27 09:26:54,079 - isca - INFO - integer, intent(in) :: put_len, to_pe, get_len, from_pe
2018-07-27 09:26:54,079 - isca - INFO - 1
2018-07-27 09:26:54,079 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,079 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:56:46:
2018-07-27 09:26:54,079 - isca - INFO - MPP_TYPE_, intent(in)  :: put_data(:,:)
2018-07-27 09:26:54,079 - isca - INFO - 1
2018-07-27 09:26:54,080 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,080 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:57:46:
2018-07-27 09:26:54,080 - isca - INFO - MPP_TYPE_, intent(out) :: get_data(:,:)
2018-07-27 09:26:54,080 - isca - INFO - 1
2018-07-27 09:26:54,080 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,080 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:58:44:
2018-07-27 09:26:54,080 - isca - INFO - logical, intent(in), optional :: block
2018-07-27 09:26:54,080 - isca - INFO - 1
2018-07-27 09:26:54,080 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,080 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:59:42:
2018-07-27 09:26:54,080 - isca - INFO - integer, intent(in), optional :: tag
2018-07-27 09:26:54,080 - isca - INFO - 1
2018-07-27 09:26:54,080 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,080 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:60:66:
2018-07-27 09:26:54,080 - isca - INFO - integer, intent(out), optional :: recv_request, send_request
2018-07-27 09:26:54,080 - isca - INFO - 1
2018-07-27 09:26:54,080 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,080 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:61:39:
2018-07-27 09:26:54,080 - isca - INFO - MPP_TYPE_ :: put_data1D(put_len), get_data1D(get_len)
2018-07-27 09:26:54,081 - isca - INFO - 1
2018-07-27 09:26:54,081 - isca - INFO - Error: Explicit shaped array with nonconstant bounds at (1)
2018-07-27 09:26:54,081 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:63:33:
2018-07-27 09:26:54,081 - isca - INFO - pointer( ptrp, put_data1D )
2018-07-27 09:26:54,081 - isca - INFO - 1
2018-07-27 09:26:54,081 - isca - INFO - Error: Unexpected attribute declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,081 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:64:33:
2018-07-27 09:26:54,081 - isca - INFO - pointer( ptrg, get_data1D )
2018-07-27 09:26:54,081 - isca - INFO - 1
2018-07-27 09:26:54,081 - isca - INFO - Error: Unexpected attribute declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,081 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:65:26:
2018-07-27 09:26:54,081 - isca - INFO - ptrp = LOC(put_data)
2018-07-27 09:26:54,081 - isca - INFO - 1
2018-07-27 09:26:54,081 - isca - INFO - Error: Unexpected assignment statement in CONTAINS section at (1)
2018-07-27 09:26:54,081 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:66:26:
2018-07-27 09:26:54,081 - isca - INFO - ptrg = LOC(get_data)
2018-07-27 09:26:54,081 - isca - INFO - 1
2018-07-27 09:26:54,081 - isca - INFO - Error: Unexpected assignment statement in CONTAINS section at (1)
2018-07-27 09:26:54,081 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:68:79:
2018-07-27 09:26:54,081 - isca - INFO - recv_request=recv_request, send_request=send_request )
2018-07-27 09:26:54,082 - isca - INFO - 1
2018-07-27 09:26:54,082 - isca - INFO - Error: Unexpected CALL statement in CONTAINS section at (1)
2018-07-27 09:26:54,082 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:70:12:
2018-07-27 09:26:54,082 - isca - INFO - return
2018-07-27 09:26:54,082 - isca - INFO - 1
2018-07-27 09:26:54,082 - isca - INFO - Error: Unexpected RETURN statement in CONTAINS section at (1)
2018-07-27 09:26:54,082 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:71:7:
2018-07-27 09:26:54,082 - isca - INFO - end subroutine MPP_TRANSMIT_2D_
2018-07-27 09:26:54,082 - isca - INFO - 1
2018-07-27 09:26:54,082 - isca - INFO - Error: Expecting END MODULE statement at (1)
2018-07-27 09:26:54,082 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:73:132:
2018-07-27 09:26:54,082 - isca - INFO - subroutine MPP_TRANSMIT_3D_( put_data, put_len, to_pe, get_data, get_len, from_pe, block, tag, recv_request, send_request )
2018-07-27 09:26:54,082 - isca - INFO - 1
2018-07-27 09:26:54,082 - isca - INFO - Error: Line truncated at (1) [-Werror=line-truncation]
2018-07-27 09:26:54,082 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:73:131:
2018-07-27 09:26:54,082 - isca - INFO - subroutine MPP_TRANSMIT_3D_( put_data, put_len, to_pe, get_data, get_len, from_pe, block, tag, recv_request, send_request )
2018-07-27 09:26:54,082 - isca - INFO - 1
2018-07-27 09:26:54,082 - isca - INFO - Error: Unexpected junk in formal argument list at (1)
2018-07-27 09:26:54,082 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:74:61:
2018-07-27 09:26:54,082 - isca - INFO - integer, intent(in) :: put_len, to_pe, get_len, from_pe
2018-07-27 09:26:54,082 - isca - INFO - 1
2018-07-27 09:26:54,082 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,083 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:75:48:
2018-07-27 09:26:54,083 - isca - INFO - MPP_TYPE_, intent(in)  :: put_data(:,:,:)
2018-07-27 09:26:54,083 - isca - INFO - 1
2018-07-27 09:26:54,083 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,083 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:76:48:
2018-07-27 09:26:54,083 - isca - INFO - MPP_TYPE_, intent(out) :: get_data(:,:,:)
2018-07-27 09:26:54,083 - isca - INFO - 1
2018-07-27 09:26:54,083 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,083 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:77:44:
2018-07-27 09:26:54,083 - isca - INFO - logical, intent(in), optional :: block
2018-07-27 09:26:54,083 - isca - INFO - 1
2018-07-27 09:26:54,083 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,083 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:78:42:
2018-07-27 09:26:54,083 - isca - INFO - integer, intent(in), optional :: tag
2018-07-27 09:26:54,083 - isca - INFO - 1
2018-07-27 09:26:54,083 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,083 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:79:66:
2018-07-27 09:26:54,083 - isca - INFO - integer, intent(out), optional :: recv_request, send_request
2018-07-27 09:26:54,084 - isca - INFO - 1
2018-07-27 09:26:54,084 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,084 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:80:39:
2018-07-27 09:26:54,084 - isca - INFO - MPP_TYPE_ :: put_data1D(put_len), get_data1D(get_len)
2018-07-27 09:26:54,084 - isca - INFO - 1
2018-07-27 09:26:54,084 - isca - INFO - Error: Explicit shaped array with nonconstant bounds at (1)
2018-07-27 09:26:54,084 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:82:33:
2018-07-27 09:26:54,084 - isca - INFO - pointer( ptrp, put_data1D )
2018-07-27 09:26:54,084 - isca - INFO - 1
2018-07-27 09:26:54,084 - isca - INFO - Error: Unexpected attribute declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,084 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:83:33:
2018-07-27 09:26:54,084 - isca - INFO - pointer( ptrg, get_data1D )
2018-07-27 09:26:54,084 - isca - INFO - 1
2018-07-27 09:26:54,084 - isca - INFO - Error: Unexpected attribute declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,084 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:84:26:
2018-07-27 09:26:54,084 - isca - INFO - ptrp = LOC(put_data)
2018-07-27 09:26:54,084 - isca - INFO - 1
2018-07-27 09:26:54,084 - isca - INFO - Error: Unexpected assignment statement in CONTAINS section at (1)
2018-07-27 09:26:54,085 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:85:26:
2018-07-27 09:26:54,085 - isca - INFO - ptrg = LOC(get_data)
2018-07-27 09:26:54,085 - isca - INFO - 1
2018-07-27 09:26:54,085 - isca - INFO - Error: Unexpected assignment statement in CONTAINS section at (1)
2018-07-27 09:26:54,085 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:87:79:
2018-07-27 09:26:54,085 - isca - INFO - recv_request=recv_request, send_request=send_request )
2018-07-27 09:26:54,085 - isca - INFO - 1
2018-07-27 09:26:54,085 - isca - INFO - Error: Unexpected CALL statement in CONTAINS section at (1)
2018-07-27 09:26:54,085 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:89:12:
2018-07-27 09:26:54,085 - isca - INFO - return
2018-07-27 09:26:54,085 - isca - INFO - 1
2018-07-27 09:26:54,085 - isca - INFO - Error: Unexpected RETURN statement in CONTAINS section at (1)
2018-07-27 09:26:54,085 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:90:7:
2018-07-27 09:26:54,085 - isca - INFO - end subroutine MPP_TRANSMIT_3D_
2018-07-27 09:26:54,085 - isca - INFO - 1
2018-07-27 09:26:54,085 - isca - INFO - Error: Expecting END MODULE statement at (1)
2018-07-27 09:26:54,085 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:92:132:
2018-07-27 09:26:54,085 - isca - INFO - subroutine MPP_TRANSMIT_4D_( put_data, put_len, to_pe, get_data, get_len, from_pe, block, tag, recv_request, send_request )
2018-07-27 09:26:54,085 - isca - INFO - 1
2018-07-27 09:26:54,085 - isca - INFO - Error: Line truncated at (1) [-Werror=line-truncation]
2018-07-27 09:26:54,085 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:92:131:
2018-07-27 09:26:54,086 - isca - INFO - subroutine MPP_TRANSMIT_4D_( put_data, put_len, to_pe, get_data, get_len, from_pe, block, tag, recv_request, send_request )
2018-07-27 09:26:54,086 - isca - INFO - 1
2018-07-27 09:26:54,086 - isca - INFO - Error: Unexpected junk in formal argument list at (1)
2018-07-27 09:26:54,086 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:93:61:
2018-07-27 09:26:54,086 - isca - INFO - integer, intent(in) :: put_len, to_pe, get_len, from_pe
2018-07-27 09:26:54,086 - isca - INFO - 1
2018-07-27 09:26:54,086 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,086 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:94:50:
2018-07-27 09:26:54,086 - isca - INFO - MPP_TYPE_, intent(in)  :: put_data(:,:,:,:)
2018-07-27 09:26:54,086 - isca - INFO - 1
2018-07-27 09:26:54,086 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,086 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:95:50:
2018-07-27 09:26:54,086 - isca - INFO - MPP_TYPE_, intent(out) :: get_data(:,:,:,:)
2018-07-27 09:26:54,086 - isca - INFO - 1
2018-07-27 09:26:54,086 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,086 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:96:44:
2018-07-27 09:26:54,086 - isca - INFO - logical, intent(in), optional :: block
2018-07-27 09:26:54,086 - isca - INFO - 1
2018-07-27 09:26:54,086 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,087 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:97:42:
2018-07-27 09:26:54,087 - isca - INFO - integer, intent(in), optional :: tag
2018-07-27 09:26:54,087 - isca - INFO - 1
2018-07-27 09:26:54,087 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,087 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:98:66:
2018-07-27 09:26:54,087 - isca - INFO - integer, intent(out), optional :: recv_request, send_request
2018-07-27 09:26:54,087 - isca - INFO - 1
2018-07-27 09:26:54,087 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,087 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:99:39:
2018-07-27 09:26:54,087 - isca - INFO - MPP_TYPE_ :: put_data1D(put_len), get_data1D(get_len)
2018-07-27 09:26:54,087 - isca - INFO - 1
2018-07-27 09:26:54,087 - isca - INFO - Error: Explicit shaped array with nonconstant bounds at (1)
2018-07-27 09:26:54,087 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:101:33:
2018-07-27 09:26:54,087 - isca - INFO - pointer( ptrp, put_data1D )
2018-07-27 09:26:54,087 - isca - INFO - 1
2018-07-27 09:26:54,087 - isca - INFO - Error: Unexpected attribute declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,087 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:102:33:
2018-07-27 09:26:54,087 - isca - INFO - pointer( ptrg, get_data1D )
2018-07-27 09:26:54,088 - isca - INFO - 1
2018-07-27 09:26:54,088 - isca - INFO - Error: Unexpected attribute declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,088 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:103:26:
2018-07-27 09:26:54,088 - isca - INFO - ptrp = LOC(put_data)
2018-07-27 09:26:54,088 - isca - INFO - 1
2018-07-27 09:26:54,088 - isca - INFO - Error: Unexpected assignment statement in CONTAINS section at (1)
2018-07-27 09:26:54,088 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:104:26:
2018-07-27 09:26:54,088 - isca - INFO - ptrg = LOC(get_data)
2018-07-27 09:26:54,088 - isca - INFO - 1
2018-07-27 09:26:54,088 - isca - INFO - Error: Unexpected assignment statement in CONTAINS section at (1)
2018-07-27 09:26:54,088 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:106:79:
2018-07-27 09:26:54,088 - isca - INFO - recv_request=recv_request, send_request=send_request )
2018-07-27 09:26:54,088 - isca - INFO - 1
2018-07-27 09:26:54,088 - isca - INFO - Error: Unexpected CALL statement in CONTAINS section at (1)
2018-07-27 09:26:54,088 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:108:12:
2018-07-27 09:26:54,088 - isca - INFO - return
2018-07-27 09:26:54,088 - isca - INFO - 1
2018-07-27 09:26:54,088 - isca - INFO - Error: Unexpected RETURN statement in CONTAINS section at (1)
2018-07-27 09:26:54,088 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:109:7:
2018-07-27 09:26:54,088 - isca - INFO - end subroutine MPP_TRANSMIT_4D_
2018-07-27 09:26:54,088 - isca - INFO - 1
2018-07-27 09:26:54,089 - isca - INFO - Error: Expecting END MODULE statement at (1)
2018-07-27 09:26:54,089 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:111:132:
2018-07-27 09:26:54,089 - isca - INFO - subroutine MPP_TRANSMIT_5D_( put_data, put_len, to_pe, get_data, get_len, from_pe, block, tag, recv_request, send_request )
2018-07-27 09:26:54,089 - isca - INFO - 1
2018-07-27 09:26:54,089 - isca - INFO - Error: Line truncated at (1) [-Werror=line-truncation]
2018-07-27 09:26:54,089 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:111:131:
2018-07-27 09:26:54,089 - isca - INFO - subroutine MPP_TRANSMIT_5D_( put_data, put_len, to_pe, get_data, get_len, from_pe, block, tag, recv_request, send_request )
2018-07-27 09:26:54,089 - isca - INFO - 1
2018-07-27 09:26:54,089 - isca - INFO - Error: Unexpected junk in formal argument list at (1)
2018-07-27 09:26:54,089 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:112:61:
2018-07-27 09:26:54,089 - isca - INFO - integer, intent(in) :: put_len, to_pe, get_len, from_pe
2018-07-27 09:26:54,089 - isca - INFO - 1
2018-07-27 09:26:54,089 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,089 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:113:52:
2018-07-27 09:26:54,089 - isca - INFO - MPP_TYPE_, intent(in)  :: put_data(:,:,:,:,:)
2018-07-27 09:26:54,089 - isca - INFO - 1
2018-07-27 09:26:54,089 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,089 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:114:52:
2018-07-27 09:26:54,089 - isca - INFO - MPP_TYPE_, intent(out) :: get_data(:,:,:,:,:)
2018-07-27 09:26:54,089 - isca - INFO - 1
2018-07-27 09:26:54,089 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,089 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:115:44:
2018-07-27 09:26:54,090 - isca - INFO - logical, intent(in), optional :: block
2018-07-27 09:26:54,090 - isca - INFO - 1
2018-07-27 09:26:54,090 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,090 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:116:42:
2018-07-27 09:26:54,090 - isca - INFO - integer, intent(in), optional :: tag
2018-07-27 09:26:54,090 - isca - INFO - 1
2018-07-27 09:26:54,090 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,090 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:117:66:
2018-07-27 09:26:54,090 - isca - INFO - integer, intent(out), optional :: recv_request, send_request
2018-07-27 09:26:54,090 - isca - INFO - 1
2018-07-27 09:26:54,090 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,090 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:118:39:
2018-07-27 09:26:54,090 - isca - INFO - MPP_TYPE_ :: put_data1D(put_len), get_data1D(get_len)
2018-07-27 09:26:54,090 - isca - INFO - 1
2018-07-27 09:26:54,090 - isca - INFO - Error: Explicit shaped array with nonconstant bounds at (1)
2018-07-27 09:26:54,090 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:120:33:
2018-07-27 09:26:54,090 - isca - INFO - pointer( ptrp, put_data1D )
2018-07-27 09:26:54,090 - isca - INFO - 1
2018-07-27 09:26:54,090 - isca - INFO - Error: Unexpected attribute declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,090 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:121:33:
2018-07-27 09:26:54,090 - isca - INFO - pointer( ptrg, get_data1D )
2018-07-27 09:26:54,090 - isca - INFO - 1
2018-07-27 09:26:54,091 - isca - INFO - Error: Unexpected attribute declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,091 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:122:26:
2018-07-27 09:26:54,091 - isca - INFO - ptrp = LOC(put_data)
2018-07-27 09:26:54,091 - isca - INFO - 1
2018-07-27 09:26:54,091 - isca - INFO - Error: Unexpected assignment statement in CONTAINS section at (1)
2018-07-27 09:26:54,091 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:123:26:
2018-07-27 09:26:54,091 - isca - INFO - ptrg = LOC(get_data)
2018-07-27 09:26:54,091 - isca - INFO - 1
2018-07-27 09:26:54,091 - isca - INFO - Error: Unexpected assignment statement in CONTAINS section at (1)
2018-07-27 09:26:54,091 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:125:79:
2018-07-27 09:26:54,091 - isca - INFO - recv_request=recv_request, send_request=send_request )
2018-07-27 09:26:54,091 - isca - INFO - 1
2018-07-27 09:26:54,091 - isca - INFO - Error: Unexpected CALL statement in CONTAINS section at (1)
2018-07-27 09:26:54,091 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:127:12:
2018-07-27 09:26:54,092 - isca - INFO - return
2018-07-27 09:26:54,092 - isca - INFO - 1
2018-07-27 09:26:54,092 - isca - INFO - Error: Unexpected RETURN statement in CONTAINS section at (1)
2018-07-27 09:26:54,092 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:128:7:
2018-07-27 09:26:54,092 - isca - INFO - end subroutine MPP_TRANSMIT_5D_
2018-07-27 09:26:54,092 - isca - INFO - 1
2018-07-27 09:26:54,092 - isca - INFO - Error: Expecting END MODULE statement at (1)
2018-07-27 09:26:54,092 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit_mpi.h:90:132:
2018-07-27 09:26:54,092 - isca - INFO - call MPI_ISEND( put_data, put_len, MPI_TYPE_, to_pe, comm_tag, mpp_comm_private, request_send(cur_send_request), error)
2018-07-27 09:26:54,092 - isca - INFO - 1
2018-07-27 09:26:54,092 - isca - INFO - Error: Line truncated at (1) [-Werror=line-truncation]
2018-07-27 09:26:54,092 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit_mpi.h:90:132:
2018-07-27 09:26:54,092 - isca - INFO - call MPI_ISEND( put_data, put_len, MPI_TYPE_, to_pe, comm_tag, mpp_comm_private, request_send(cur_send_request), error)
2018-07-27 09:26:54,092 - isca - INFO - 1
2018-07-27 09:26:54,092 - isca - INFO - Error: Syntax error in argument list at (1)
2018-07-27 09:26:54,099 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit_mpi.h:90:132:
2018-07-27 09:26:54,099 - isca - INFO - call MPI_ISEND( put_data, put_len, MPI_TYPE_, to_pe, comm_tag, mpp_comm_private, request_send(cur_send_request), error)
2018-07-27 09:26:54,099 - isca - INFO - 1
2018-07-27 09:26:54,099 - isca - INFO - Error: Line truncated at (1) [-Werror=line-truncation]
2018-07-27 09:26:54,099 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit_mpi.h:90:132:
2018-07-27 09:26:54,099 - isca - INFO - call MPI_ISEND( put_data, put_len, MPI_TYPE_, to_pe, comm_tag, mpp_comm_private, request_send(cur_send_request), error)
2018-07-27 09:26:54,099 - isca - INFO - 1
2018-07-27 09:26:54,099 - isca - INFO - Error: Syntax error in argument list at (1)
2018-07-27 09:26:54,108 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit_mpi.h:90:132:
2018-07-27 09:26:54,108 - isca - INFO - call MPI_ISEND( put_data, put_len, MPI_TYPE_, to_pe, comm_tag, mpp_comm_private, request_send(cur_send_request), error)
2018-07-27 09:26:54,108 - isca - INFO - 1
2018-07-27 09:26:54,108 - isca - INFO - Error: Line truncated at (1) [-Werror=line-truncation]
2018-07-27 09:26:54,108 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit_mpi.h:90:132:
2018-07-27 09:26:54,108 - isca - INFO - call MPI_ISEND( put_data, put_len, MPI_TYPE_, to_pe, comm_tag, mpp_comm_private, request_send(cur_send_request), error)
2018-07-27 09:26:54,108 - isca - INFO - 1
2018-07-27 09:26:54,108 - isca - INFO - Error: Syntax error in argument list at (1)
2018-07-27 09:26:54,114 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:54:132:
2018-07-27 09:26:54,114 - isca - INFO - subroutine MPP_TRANSMIT_2D_( put_data, put_len, to_pe, get_data, get_len, from_pe, block, tag, recv_request, send_request )
2018-07-27 09:26:54,114 - isca - INFO - 1
2018-07-27 09:26:54,114 - isca - INFO - Error: Line truncated at (1) [-Werror=line-truncation]
2018-07-27 09:26:54,114 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:54:132:
2018-07-27 09:26:54,114 - isca - INFO - subroutine MPP_TRANSMIT_2D_( put_data, put_len, to_pe, get_data, get_len, from_pe, block, tag, recv_request, send_request )
2018-07-27 09:26:54,114 - isca - INFO - 1
2018-07-27 09:26:54,114 - isca - INFO - Error: Unexpected junk in formal argument list at (1)
2018-07-27 09:26:54,114 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:55:61:
2018-07-27 09:26:54,114 - isca - INFO - integer, intent(in) :: put_len, to_pe, get_len, from_pe
2018-07-27 09:26:54,114 - isca - INFO - 1
2018-07-27 09:26:54,114 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,114 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:56:46:
2018-07-27 09:26:54,114 - isca - INFO - MPP_TYPE_, intent(in)  :: put_data(:,:)
2018-07-27 09:26:54,115 - isca - INFO - 1
2018-07-27 09:26:54,115 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,115 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:57:46:
2018-07-27 09:26:54,115 - isca - INFO - MPP_TYPE_, intent(out) :: get_data(:,:)
2018-07-27 09:26:54,115 - isca - INFO - 1
2018-07-27 09:26:54,115 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,115 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:58:44:
2018-07-27 09:26:54,115 - isca - INFO - logical, intent(in), optional :: block
2018-07-27 09:26:54,115 - isca - INFO - 1
2018-07-27 09:26:54,115 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,115 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:59:42:
2018-07-27 09:26:54,115 - isca - INFO - integer, intent(in), optional :: tag
2018-07-27 09:26:54,115 - isca - INFO - 1
2018-07-27 09:26:54,115 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,115 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:60:66:
2018-07-27 09:26:54,115 - isca - INFO - integer, intent(out), optional :: recv_request, send_request
2018-07-27 09:26:54,115 - isca - INFO - 1
2018-07-27 09:26:54,115 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,116 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:61:39:
2018-07-27 09:26:54,116 - isca - INFO - MPP_TYPE_ :: put_data1D(put_len), get_data1D(get_len)
2018-07-27 09:26:54,116 - isca - INFO - 1
2018-07-27 09:26:54,116 - isca - INFO - Error: Explicit shaped array with nonconstant bounds at (1)
2018-07-27 09:26:54,116 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:63:33:
2018-07-27 09:26:54,116 - isca - INFO - pointer( ptrp, put_data1D )
2018-07-27 09:26:54,116 - isca - INFO - 1
2018-07-27 09:26:54,116 - isca - INFO - Error: Unexpected attribute declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,116 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:64:33:
2018-07-27 09:26:54,116 - isca - INFO - pointer( ptrg, get_data1D )
2018-07-27 09:26:54,116 - isca - INFO - 1
2018-07-27 09:26:54,116 - isca - INFO - Error: Unexpected attribute declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,116 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:65:26:
2018-07-27 09:26:54,116 - isca - INFO - ptrp = LOC(put_data)
2018-07-27 09:26:54,116 - isca - INFO - 1
2018-07-27 09:26:54,116 - isca - INFO - Error: Unexpected assignment statement in CONTAINS section at (1)
2018-07-27 09:26:54,116 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:66:26:
2018-07-27 09:26:54,116 - isca - INFO - ptrg = LOC(get_data)
2018-07-27 09:26:54,116 - isca - INFO - 1
2018-07-27 09:26:54,117 - isca - INFO - Error: Unexpected assignment statement in CONTAINS section at (1)
2018-07-27 09:26:54,117 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:68:79:
2018-07-27 09:26:54,117 - isca - INFO - recv_request=recv_request, send_request=send_request )
2018-07-27 09:26:54,117 - isca - INFO - 1
2018-07-27 09:26:54,117 - isca - INFO - Error: Unexpected CALL statement in CONTAINS section at (1)
2018-07-27 09:26:54,117 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:70:12:
2018-07-27 09:26:54,117 - isca - INFO - return
2018-07-27 09:26:54,117 - isca - INFO - 1
2018-07-27 09:26:54,117 - isca - INFO - Error: Unexpected RETURN statement in CONTAINS section at (1)
2018-07-27 09:26:54,117 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:71:7:
2018-07-27 09:26:54,117 - isca - INFO - end subroutine MPP_TRANSMIT_2D_
2018-07-27 09:26:54,117 - isca - INFO - 1
2018-07-27 09:26:54,117 - isca - INFO - Error: Expecting END MODULE statement at (1)
2018-07-27 09:26:54,117 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:73:132:
2018-07-27 09:26:54,117 - isca - INFO - subroutine MPP_TRANSMIT_3D_( put_data, put_len, to_pe, get_data, get_len, from_pe, block, tag, recv_request, send_request )
2018-07-27 09:26:54,117 - isca - INFO - 1
2018-07-27 09:26:54,117 - isca - INFO - Error: Line truncated at (1) [-Werror=line-truncation]
2018-07-27 09:26:54,117 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:73:132:
2018-07-27 09:26:54,118 - isca - INFO - subroutine MPP_TRANSMIT_3D_( put_data, put_len, to_pe, get_data, get_len, from_pe, block, tag, recv_request, send_request )
2018-07-27 09:26:54,118 - isca - INFO - 1
2018-07-27 09:26:54,118 - isca - INFO - Error: Unexpected junk in formal argument list at (1)
2018-07-27 09:26:54,118 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:74:61:
2018-07-27 09:26:54,118 - isca - INFO - integer, intent(in) :: put_len, to_pe, get_len, from_pe
2018-07-27 09:26:54,118 - isca - INFO - 1
2018-07-27 09:26:54,118 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,118 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:75:48:
2018-07-27 09:26:54,118 - isca - INFO - MPP_TYPE_, intent(in)  :: put_data(:,:,:)
2018-07-27 09:26:54,118 - isca - INFO - 1
2018-07-27 09:26:54,118 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,118 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:76:48:
2018-07-27 09:26:54,118 - isca - INFO - MPP_TYPE_, intent(out) :: get_data(:,:,:)
2018-07-27 09:26:54,118 - isca - INFO - 1
2018-07-27 09:26:54,119 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,119 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:77:44:
2018-07-27 09:26:54,119 - isca - INFO - logical, intent(in), optional :: block
2018-07-27 09:26:54,119 - isca - INFO - 1
2018-07-27 09:26:54,119 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,119 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:78:42:
2018-07-27 09:26:54,119 - isca - INFO - integer, intent(in), optional :: tag
2018-07-27 09:26:54,119 - isca - INFO - 1
2018-07-27 09:26:54,119 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,119 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:79:66:
2018-07-27 09:26:54,119 - isca - INFO - integer, intent(out), optional :: recv_request, send_request
2018-07-27 09:26:54,119 - isca - INFO - 1
2018-07-27 09:26:54,119 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,119 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:80:39:
2018-07-27 09:26:54,119 - isca - INFO - MPP_TYPE_ :: put_data1D(put_len), get_data1D(get_len)
2018-07-27 09:26:54,119 - isca - INFO - 1
2018-07-27 09:26:54,119 - isca - INFO - Error: Explicit shaped array with nonconstant bounds at (1)
2018-07-27 09:26:54,119 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:82:33:
2018-07-27 09:26:54,123 - isca - INFO - pointer( ptrp, put_data1D )
2018-07-27 09:26:54,123 - isca - INFO - 1
2018-07-27 09:26:54,123 - isca - INFO - Error: Unexpected attribute declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,123 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:83:33:
2018-07-27 09:26:54,123 - isca - INFO - pointer( ptrg, get_data1D )
2018-07-27 09:26:54,123 - isca - INFO - 1
2018-07-27 09:26:54,123 - isca - INFO - Error: Unexpected attribute declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,123 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:84:26:
2018-07-27 09:26:54,123 - isca - INFO - ptrp = LOC(put_data)
2018-07-27 09:26:54,123 - isca - INFO - 1
2018-07-27 09:26:54,123 - isca - INFO - Error: Unexpected assignment statement in CONTAINS section at (1)
2018-07-27 09:26:54,123 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:85:26:
2018-07-27 09:26:54,123 - isca - INFO - ptrg = LOC(get_data)
2018-07-27 09:26:54,123 - isca - INFO - 1
2018-07-27 09:26:54,123 - isca - INFO - Error: Unexpected assignment statement in CONTAINS section at (1)
2018-07-27 09:26:54,123 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:87:79:
2018-07-27 09:26:54,123 - isca - INFO - recv_request=recv_request, send_request=send_request )
2018-07-27 09:26:54,123 - isca - INFO - 1
2018-07-27 09:26:54,123 - isca - INFO - Error: Unexpected CALL statement in CONTAINS section at (1)
2018-07-27 09:26:54,123 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:89:12:
2018-07-27 09:26:54,123 - isca - INFO - return
2018-07-27 09:26:54,124 - isca - INFO - 1
2018-07-27 09:26:54,124 - isca - INFO - Error: Unexpected RETURN statement in CONTAINS section at (1)
2018-07-27 09:26:54,124 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:90:7:
2018-07-27 09:26:54,124 - isca - INFO - end subroutine MPP_TRANSMIT_3D_
2018-07-27 09:26:54,124 - isca - INFO - 1
2018-07-27 09:26:54,124 - isca - INFO - Error: Expecting END MODULE statement at (1)
2018-07-27 09:26:54,124 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:92:132:
2018-07-27 09:26:54,124 - isca - INFO - subroutine MPP_TRANSMIT_4D_( put_data, put_len, to_pe, get_data, get_len, from_pe, block, tag, recv_request, send_request )
2018-07-27 09:26:54,124 - isca - INFO - 1
2018-07-27 09:26:54,124 - isca - INFO - Error: Line truncated at (1) [-Werror=line-truncation]
2018-07-27 09:26:54,124 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:92:132:
2018-07-27 09:26:54,124 - isca - INFO - subroutine MPP_TRANSMIT_4D_( put_data, put_len, to_pe, get_data, get_len, from_pe, block, tag, recv_request, send_request )
2018-07-27 09:26:54,124 - isca - INFO - 1
2018-07-27 09:26:54,124 - isca - INFO - Error: Unexpected junk in formal argument list at (1)
2018-07-27 09:26:54,124 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:93:61:
2018-07-27 09:26:54,124 - isca - INFO - integer, intent(in) :: put_len, to_pe, get_len, from_pe
2018-07-27 09:26:54,124 - isca - INFO - 1
2018-07-27 09:26:54,124 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,124 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:94:50:
2018-07-27 09:26:54,124 - isca - INFO - MPP_TYPE_, intent(in)  :: put_data(:,:,:,:)
2018-07-27 09:26:54,124 - isca - INFO - 1
2018-07-27 09:26:54,125 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,125 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:95:50:
2018-07-27 09:26:54,125 - isca - INFO - MPP_TYPE_, intent(out) :: get_data(:,:,:,:)
2018-07-27 09:26:54,125 - isca - INFO - 1
2018-07-27 09:26:54,125 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,125 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:96:44:
2018-07-27 09:26:54,125 - isca - INFO - logical, intent(in), optional :: block
2018-07-27 09:26:54,125 - isca - INFO - 1
2018-07-27 09:26:54,125 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,125 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:97:42:
2018-07-27 09:26:54,125 - isca - INFO - integer, intent(in), optional :: tag
2018-07-27 09:26:54,125 - isca - INFO - 1
2018-07-27 09:26:54,125 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,125 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:98:66:
2018-07-27 09:26:54,125 - isca - INFO - integer, intent(out), optional :: recv_request, send_request
2018-07-27 09:26:54,125 - isca - INFO - 1
2018-07-27 09:26:54,125 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,125 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:99:39:
2018-07-27 09:26:54,126 - isca - INFO - MPP_TYPE_ :: put_data1D(put_len), get_data1D(get_len)
2018-07-27 09:26:54,126 - isca - INFO - 1
2018-07-27 09:26:54,126 - isca - INFO - Error: Explicit shaped array with nonconstant bounds at (1)
2018-07-27 09:26:54,126 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:101:33:
2018-07-27 09:26:54,126 - isca - INFO - pointer( ptrp, put_data1D )
2018-07-27 09:26:54,126 - isca - INFO - 1
2018-07-27 09:26:54,126 - isca - INFO - Error: Unexpected attribute declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,126 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:102:33:
2018-07-27 09:26:54,126 - isca - INFO - pointer( ptrg, get_data1D )
2018-07-27 09:26:54,126 - isca - INFO - 1
2018-07-27 09:26:54,126 - isca - INFO - Error: Unexpected attribute declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,126 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:103:26:
2018-07-27 09:26:54,126 - isca - INFO - ptrp = LOC(put_data)
2018-07-27 09:26:54,126 - isca - INFO - 1
2018-07-27 09:26:54,126 - isca - INFO - Error: Unexpected assignment statement in CONTAINS section at (1)
2018-07-27 09:26:54,126 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:104:26:
2018-07-27 09:26:54,126 - isca - INFO - ptrg = LOC(get_data)
2018-07-27 09:26:54,126 - isca - INFO - 1
2018-07-27 09:26:54,126 - isca - INFO - Error: Unexpected assignment statement in CONTAINS section at (1)
2018-07-27 09:26:54,126 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:106:79:
2018-07-27 09:26:54,126 - isca - INFO - recv_request=recv_request, send_request=send_request )
2018-07-27 09:26:54,127 - isca - INFO - 1
2018-07-27 09:26:54,127 - isca - INFO - Error: Unexpected CALL statement in CONTAINS section at (1)
2018-07-27 09:26:54,127 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:108:12:
2018-07-27 09:26:54,127 - isca - INFO - return
2018-07-27 09:26:54,127 - isca - INFO - 1
2018-07-27 09:26:54,127 - isca - INFO - Error: Unexpected RETURN statement in CONTAINS section at (1)
2018-07-27 09:26:54,127 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:109:7:
2018-07-27 09:26:54,127 - isca - INFO - end subroutine MPP_TRANSMIT_4D_
2018-07-27 09:26:54,127 - isca - INFO - 1
2018-07-27 09:26:54,127 - isca - INFO - Error: Expecting END MODULE statement at (1)
2018-07-27 09:26:54,127 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:111:132:
2018-07-27 09:26:54,127 - isca - INFO - subroutine MPP_TRANSMIT_5D_( put_data, put_len, to_pe, get_data, get_len, from_pe, block, tag, recv_request, send_request )
2018-07-27 09:26:54,127 - isca - INFO - 1
2018-07-27 09:26:54,127 - isca - INFO - Error: Line truncated at (1) [-Werror=line-truncation]
2018-07-27 09:26:54,127 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:111:132:
2018-07-27 09:26:54,127 - isca - INFO - subroutine MPP_TRANSMIT_5D_( put_data, put_len, to_pe, get_data, get_len, from_pe, block, tag, recv_request, send_request )
2018-07-27 09:26:54,127 - isca - INFO - 1
2018-07-27 09:26:54,127 - isca - INFO - Error: Unexpected junk in formal argument list at (1)
2018-07-27 09:26:54,127 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:112:61:
2018-07-27 09:26:54,127 - isca - INFO - integer, intent(in) :: put_len, to_pe, get_len, from_pe
2018-07-27 09:26:54,127 - isca - INFO - 1
2018-07-27 09:26:54,127 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,128 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:113:52:
2018-07-27 09:26:54,128 - isca - INFO - MPP_TYPE_, intent(in)  :: put_data(:,:,:,:,:)
2018-07-27 09:26:54,128 - isca - INFO - 1
2018-07-27 09:26:54,128 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,128 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:114:52:
2018-07-27 09:26:54,128 - isca - INFO - MPP_TYPE_, intent(out) :: get_data(:,:,:,:,:)
2018-07-27 09:26:54,128 - isca - INFO - 1
2018-07-27 09:26:54,128 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,128 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:115:44:
2018-07-27 09:26:54,128 - isca - INFO - logical, intent(in), optional :: block
2018-07-27 09:26:54,128 - isca - INFO - 1
2018-07-27 09:26:54,128 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,128 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:116:42:
2018-07-27 09:26:54,128 - isca - INFO - integer, intent(in), optional :: tag
2018-07-27 09:26:54,128 - isca - INFO - 1
2018-07-27 09:26:54,128 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,128 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:117:66:
2018-07-27 09:26:54,128 - isca - INFO - integer, intent(out), optional :: recv_request, send_request
2018-07-27 09:26:54,128 - isca - INFO - 1
2018-07-27 09:26:54,128 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,128 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:118:39:
2018-07-27 09:26:54,128 - isca - INFO - MPP_TYPE_ :: put_data1D(put_len), get_data1D(get_len)
2018-07-27 09:26:54,129 - isca - INFO - 1
2018-07-27 09:26:54,129 - isca - INFO - Error: Explicit shaped array with nonconstant bounds at (1)
2018-07-27 09:26:54,129 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:120:33:
2018-07-27 09:26:54,129 - isca - INFO - pointer( ptrp, put_data1D )
2018-07-27 09:26:54,129 - isca - INFO - 1
2018-07-27 09:26:54,129 - isca - INFO - Error: Unexpected attribute declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,129 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:121:33:
2018-07-27 09:26:54,129 - isca - INFO - pointer( ptrg, get_data1D )
2018-07-27 09:26:54,129 - isca - INFO - 1
2018-07-27 09:26:54,129 - isca - INFO - Error: Unexpected attribute declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,129 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:122:26:
2018-07-27 09:26:54,129 - isca - INFO - ptrp = LOC(put_data)
2018-07-27 09:26:54,129 - isca - INFO - 1
2018-07-27 09:26:54,129 - isca - INFO - Error: Unexpected assignment statement in CONTAINS section at (1)
2018-07-27 09:26:54,129 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:123:26:
2018-07-27 09:26:54,129 - isca - INFO - ptrg = LOC(get_data)
2018-07-27 09:26:54,129 - isca - INFO - 1
2018-07-27 09:26:54,129 - isca - INFO - Error: Unexpected assignment statement in CONTAINS section at (1)
2018-07-27 09:26:54,129 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:125:79:
2018-07-27 09:26:54,129 - isca - INFO - recv_request=recv_request, send_request=send_request )
2018-07-27 09:26:54,129 - isca - INFO - 1
2018-07-27 09:26:54,130 - isca - INFO - Error: Unexpected CALL statement in CONTAINS section at (1)
2018-07-27 09:26:54,130 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:127:12:
2018-07-27 09:26:54,130 - isca - INFO - return
2018-07-27 09:26:54,130 - isca - INFO - 1
2018-07-27 09:26:54,130 - isca - INFO - Error: Unexpected RETURN statement in CONTAINS section at (1)
2018-07-27 09:26:54,130 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:128:7:
2018-07-27 09:26:54,130 - isca - INFO - end subroutine MPP_TRANSMIT_5D_
2018-07-27 09:26:54,130 - isca - INFO - 1
2018-07-27 09:26:54,130 - isca - INFO - Error: Expecting END MODULE statement at (1)
2018-07-27 09:26:54,130 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit_mpi.h:90:132:
2018-07-27 09:26:54,130 - isca - INFO - call MPI_ISEND( put_data, put_len, MPI_TYPE_, to_pe, comm_tag, mpp_comm_private, request_send(cur_send_request), error)
2018-07-27 09:26:54,130 - isca - INFO - 1
2018-07-27 09:26:54,130 - isca - INFO - Error: Line truncated at (1) [-Werror=line-truncation]
2018-07-27 09:26:54,130 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit_mpi.h:90:132:
2018-07-27 09:26:54,130 - isca - INFO - call MPI_ISEND( put_data, put_len, MPI_TYPE_, to_pe, comm_tag, mpp_comm_private, request_send(cur_send_request), error)
2018-07-27 09:26:54,130 - isca - INFO - 1
2018-07-27 09:26:54,130 - isca - INFO - Error: Syntax error in argument list at (1)
2018-07-27 09:26:54,131 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:54:132:
2018-07-27 09:26:54,131 - isca - INFO - subroutine MPP_TRANSMIT_2D_( put_data, put_len, to_pe, get_data, get_len, from_pe, block, tag, recv_request, send_request )
2018-07-27 09:26:54,131 - isca - INFO - 1
2018-07-27 09:26:54,131 - isca - INFO - Error: Line truncated at (1) [-Werror=line-truncation]
2018-07-27 09:26:54,131 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:54:132:
2018-07-27 09:26:54,131 - isca - INFO - subroutine MPP_TRANSMIT_2D_( put_data, put_len, to_pe, get_data, get_len, from_pe, block, tag, recv_request, send_request )
2018-07-27 09:26:54,131 - isca - INFO - 1
2018-07-27 09:26:54,131 - isca - INFO - Error: Unexpected junk in formal argument list at (1)
2018-07-27 09:26:54,131 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:55:61:
2018-07-27 09:26:54,131 - isca - INFO - integer, intent(in) :: put_len, to_pe, get_len, from_pe
2018-07-27 09:26:54,131 - isca - INFO - 1
2018-07-27 09:26:54,131 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,131 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:56:46:
2018-07-27 09:26:54,131 - isca - INFO - MPP_TYPE_, intent(in)  :: put_data(:,:)
2018-07-27 09:26:54,131 - isca - INFO - 1
2018-07-27 09:26:54,131 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,131 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:57:46:
2018-07-27 09:26:54,131 - isca - INFO - MPP_TYPE_, intent(out) :: get_data(:,:)
2018-07-27 09:26:54,132 - isca - INFO - 1
2018-07-27 09:26:54,132 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,132 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:58:44:
2018-07-27 09:26:54,132 - isca - INFO - logical, intent(in), optional :: block
2018-07-27 09:26:54,132 - isca - INFO - 1
2018-07-27 09:26:54,132 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,132 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:59:42:
2018-07-27 09:26:54,132 - isca - INFO - integer, intent(in), optional :: tag
2018-07-27 09:26:54,132 - isca - INFO - 1
2018-07-27 09:26:54,132 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,132 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:60:66:
2018-07-27 09:26:54,132 - isca - INFO - integer, intent(out), optional :: recv_request, send_request
2018-07-27 09:26:54,132 - isca - INFO - 1
2018-07-27 09:26:54,132 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,132 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:61:39:
2018-07-27 09:26:54,132 - isca - INFO - MPP_TYPE_ :: put_data1D(put_len), get_data1D(get_len)
2018-07-27 09:26:54,132 - isca - INFO - 1
2018-07-27 09:26:54,132 - isca - INFO - Error: Explicit shaped array with nonconstant bounds at (1)
2018-07-27 09:26:54,133 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:63:33:
2018-07-27 09:26:54,133 - isca - INFO - pointer( ptrp, put_data1D )
2018-07-27 09:26:54,133 - isca - INFO - 1
2018-07-27 09:26:54,133 - isca - INFO - Error: Unexpected attribute declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,133 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:64:33:
2018-07-27 09:26:54,133 - isca - INFO - pointer( ptrg, get_data1D )
2018-07-27 09:26:54,133 - isca - INFO - 1
2018-07-27 09:26:54,133 - isca - INFO - Error: Unexpected attribute declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,133 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:65:26:
2018-07-27 09:26:54,133 - isca - INFO - ptrp = LOC(put_data)
2018-07-27 09:26:54,133 - isca - INFO - 1
2018-07-27 09:26:54,133 - isca - INFO - Error: Unexpected assignment statement in CONTAINS section at (1)
2018-07-27 09:26:54,133 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:66:26:
2018-07-27 09:26:54,133 - isca - INFO - ptrg = LOC(get_data)
2018-07-27 09:26:54,133 - isca - INFO - 1
2018-07-27 09:26:54,133 - isca - INFO - Error: Unexpected assignment statement in CONTAINS section at (1)
2018-07-27 09:26:54,133 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:68:79:
2018-07-27 09:26:54,133 - isca - INFO - recv_request=recv_request, send_request=send_request )
2018-07-27 09:26:54,133 - isca - INFO - 1
2018-07-27 09:26:54,134 - isca - INFO - Error: Unexpected CALL statement in CONTAINS section at (1)
2018-07-27 09:26:54,134 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:70:12:
2018-07-27 09:26:54,134 - isca - INFO - return
2018-07-27 09:26:54,134 - isca - INFO - 1
2018-07-27 09:26:54,134 - isca - INFO - Error: Unexpected RETURN statement in CONTAINS section at (1)
2018-07-27 09:26:54,134 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:71:7:
2018-07-27 09:26:54,134 - isca - INFO - end subroutine MPP_TRANSMIT_2D_
2018-07-27 09:26:54,134 - isca - INFO - 1
2018-07-27 09:26:54,134 - isca - INFO - Error: Expecting END MODULE statement at (1)
2018-07-27 09:26:54,134 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:73:132:
2018-07-27 09:26:54,134 - isca - INFO - subroutine MPP_TRANSMIT_3D_( put_data, put_len, to_pe, get_data, get_len, from_pe, block, tag, recv_request, send_request )
2018-07-27 09:26:54,134 - isca - INFO - 1
2018-07-27 09:26:54,134 - isca - INFO - Error: Line truncated at (1) [-Werror=line-truncation]
2018-07-27 09:26:54,134 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:73:132:
2018-07-27 09:26:54,134 - isca - INFO - subroutine MPP_TRANSMIT_3D_( put_data, put_len, to_pe, get_data, get_len, from_pe, block, tag, recv_request, send_request )
2018-07-27 09:26:54,134 - isca - INFO - 1
2018-07-27 09:26:54,134 - isca - INFO - Error: Unexpected junk in formal argument list at (1)
2018-07-27 09:26:54,134 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:74:61:
2018-07-27 09:26:54,135 - isca - INFO - integer, intent(in) :: put_len, to_pe, get_len, from_pe
2018-07-27 09:26:54,135 - isca - INFO - 1
2018-07-27 09:26:54,135 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,135 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:75:48:
2018-07-27 09:26:54,135 - isca - INFO - MPP_TYPE_, intent(in)  :: put_data(:,:,:)
2018-07-27 09:26:54,135 - isca - INFO - 1
2018-07-27 09:26:54,135 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,135 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:76:48:
2018-07-27 09:26:54,135 - isca - INFO - MPP_TYPE_, intent(out) :: get_data(:,:,:)
2018-07-27 09:26:54,135 - isca - INFO - 1
2018-07-27 09:26:54,135 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,135 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:77:44:
2018-07-27 09:26:54,135 - isca - INFO - logical, intent(in), optional :: block
2018-07-27 09:26:54,135 - isca - INFO - 1
2018-07-27 09:26:54,135 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,135 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:78:42:
2018-07-27 09:26:54,135 - isca - INFO - integer, intent(in), optional :: tag
2018-07-27 09:26:54,135 - isca - INFO - 1
2018-07-27 09:26:54,136 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,136 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:79:66:
2018-07-27 09:26:54,136 - isca - INFO - integer, intent(out), optional :: recv_request, send_request
2018-07-27 09:26:54,136 - isca - INFO - 1
2018-07-27 09:26:54,136 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,136 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:80:39:
2018-07-27 09:26:54,136 - isca - INFO - MPP_TYPE_ :: put_data1D(put_len), get_data1D(get_len)
2018-07-27 09:26:54,136 - isca - INFO - 1
2018-07-27 09:26:54,136 - isca - INFO - Error: Explicit shaped array with nonconstant bounds at (1)
2018-07-27 09:26:54,136 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:82:33:
2018-07-27 09:26:54,136 - isca - INFO - pointer( ptrp, put_data1D )
2018-07-27 09:26:54,136 - isca - INFO - 1
2018-07-27 09:26:54,136 - isca - INFO - Error: Unexpected attribute declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,136 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:83:33:
2018-07-27 09:26:54,136 - isca - INFO - pointer( ptrg, get_data1D )
2018-07-27 09:26:54,136 - isca - INFO - 1
2018-07-27 09:26:54,136 - isca - INFO - Error: Unexpected attribute declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,136 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:84:26:
2018-07-27 09:26:54,136 - isca - INFO - ptrp = LOC(put_data)
2018-07-27 09:26:54,137 - isca - INFO - 1
2018-07-27 09:26:54,137 - isca - INFO - Error: Unexpected assignment statement in CONTAINS section at (1)
2018-07-27 09:26:54,137 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:85:26:
2018-07-27 09:26:54,137 - isca - INFO - ptrg = LOC(get_data)
2018-07-27 09:26:54,137 - isca - INFO - 1
2018-07-27 09:26:54,137 - isca - INFO - Error: Unexpected assignment statement in CONTAINS section at (1)
2018-07-27 09:26:54,137 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:87:79:
2018-07-27 09:26:54,137 - isca - INFO - recv_request=recv_request, send_request=send_request )
2018-07-27 09:26:54,137 - isca - INFO - 1
2018-07-27 09:26:54,137 - isca - INFO - Error: Unexpected CALL statement in CONTAINS section at (1)
2018-07-27 09:26:54,137 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:89:12:
2018-07-27 09:26:54,137 - isca - INFO - return
2018-07-27 09:26:54,137 - isca - INFO - 1
2018-07-27 09:26:54,137 - isca - INFO - Error: Unexpected RETURN statement in CONTAINS section at (1)
2018-07-27 09:26:54,137 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:90:7:
2018-07-27 09:26:54,137 - isca - INFO - end subroutine MPP_TRANSMIT_3D_
2018-07-27 09:26:54,137 - isca - INFO - 1
2018-07-27 09:26:54,137 - isca - INFO - Error: Expecting END MODULE statement at (1)
2018-07-27 09:26:54,138 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:92:132:
2018-07-27 09:26:54,138 - isca - INFO - subroutine MPP_TRANSMIT_4D_( put_data, put_len, to_pe, get_data, get_len, from_pe, block, tag, recv_request, send_request )
2018-07-27 09:26:54,138 - isca - INFO - 1
2018-07-27 09:26:54,138 - isca - INFO - Error: Line truncated at (1) [-Werror=line-truncation]
2018-07-27 09:26:54,138 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:92:132:
2018-07-27 09:26:54,138 - isca - INFO - subroutine MPP_TRANSMIT_4D_( put_data, put_len, to_pe, get_data, get_len, from_pe, block, tag, recv_request, send_request )
2018-07-27 09:26:54,138 - isca - INFO - 1
2018-07-27 09:26:54,138 - isca - INFO - Error: Unexpected junk in formal argument list at (1)
2018-07-27 09:26:54,138 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:93:61:
2018-07-27 09:26:54,138 - isca - INFO - integer, intent(in) :: put_len, to_pe, get_len, from_pe
2018-07-27 09:26:54,138 - isca - INFO - 1
2018-07-27 09:26:54,138 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,138 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:94:50:
2018-07-27 09:26:54,138 - isca - INFO - MPP_TYPE_, intent(in)  :: put_data(:,:,:,:)
2018-07-27 09:26:54,138 - isca - INFO - 1
2018-07-27 09:26:54,138 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,138 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:95:50:
2018-07-27 09:26:54,138 - isca - INFO - MPP_TYPE_, intent(out) :: get_data(:,:,:,:)
2018-07-27 09:26:54,138 - isca - INFO - 1
2018-07-27 09:26:54,138 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,138 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:96:44:
2018-07-27 09:26:54,139 - isca - INFO - logical, intent(in), optional :: block
2018-07-27 09:26:54,139 - isca - INFO - 1
2018-07-27 09:26:54,139 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,139 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:97:42:
2018-07-27 09:26:54,139 - isca - INFO - integer, intent(in), optional :: tag
2018-07-27 09:26:54,139 - isca - INFO - 1
2018-07-27 09:26:54,139 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,139 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:98:66:
2018-07-27 09:26:54,139 - isca - INFO - integer, intent(out), optional :: recv_request, send_request
2018-07-27 09:26:54,139 - isca - INFO - 1
2018-07-27 09:26:54,139 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,139 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:99:39:
2018-07-27 09:26:54,139 - isca - INFO - MPP_TYPE_ :: put_data1D(put_len), get_data1D(get_len)
2018-07-27 09:26:54,139 - isca - INFO - 1
2018-07-27 09:26:54,139 - isca - INFO - Error: Explicit shaped array with nonconstant bounds at (1)
2018-07-27 09:26:54,139 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:101:33:
2018-07-27 09:26:54,139 - isca - INFO - pointer( ptrp, put_data1D )
2018-07-27 09:26:54,139 - isca - INFO - 1
2018-07-27 09:26:54,140 - isca - INFO - Error: Unexpected attribute declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,140 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:102:33:
2018-07-27 09:26:54,140 - isca - INFO - pointer( ptrg, get_data1D )
2018-07-27 09:26:54,140 - isca - INFO - 1
2018-07-27 09:26:54,140 - isca - INFO - Error: Unexpected attribute declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,140 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:103:26:
2018-07-27 09:26:54,140 - isca - INFO - ptrp = LOC(put_data)
2018-07-27 09:26:54,140 - isca - INFO - 1
2018-07-27 09:26:54,140 - isca - INFO - Error: Unexpected assignment statement in CONTAINS section at (1)
2018-07-27 09:26:54,140 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:104:26:
2018-07-27 09:26:54,140 - isca - INFO - ptrg = LOC(get_data)
2018-07-27 09:26:54,140 - isca - INFO - 1
2018-07-27 09:26:54,140 - isca - INFO - Error: Unexpected assignment statement in CONTAINS section at (1)
2018-07-27 09:26:54,140 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:106:79:
2018-07-27 09:26:54,140 - isca - INFO - recv_request=recv_request, send_request=send_request )
2018-07-27 09:26:54,140 - isca - INFO - 1
2018-07-27 09:26:54,140 - isca - INFO - Error: Unexpected CALL statement in CONTAINS section at (1)
2018-07-27 09:26:54,140 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:108:12:
2018-07-27 09:26:54,140 - isca - INFO - return
2018-07-27 09:26:54,140 - isca - INFO - 1
2018-07-27 09:26:54,140 - isca - INFO - Error: Unexpected RETURN statement in CONTAINS section at (1)
2018-07-27 09:26:54,141 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:109:7:
2018-07-27 09:26:54,141 - isca - INFO - end subroutine MPP_TRANSMIT_4D_
2018-07-27 09:26:54,141 - isca - INFO - 1
2018-07-27 09:26:54,141 - isca - INFO - Error: Expecting END MODULE statement at (1)
2018-07-27 09:26:54,141 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:111:132:
2018-07-27 09:26:54,141 - isca - INFO - subroutine MPP_TRANSMIT_5D_( put_data, put_len, to_pe, get_data, get_len, from_pe, block, tag, recv_request, send_request )
2018-07-27 09:26:54,141 - isca - INFO - 1
2018-07-27 09:26:54,141 - isca - INFO - Error: Line truncated at (1) [-Werror=line-truncation]
2018-07-27 09:26:54,141 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:111:132:
2018-07-27 09:26:54,141 - isca - INFO - subroutine MPP_TRANSMIT_5D_( put_data, put_len, to_pe, get_data, get_len, from_pe, block, tag, recv_request, send_request )
2018-07-27 09:26:54,141 - isca - INFO - 1
2018-07-27 09:26:54,141 - isca - INFO - Error: Unexpected junk in formal argument list at (1)
2018-07-27 09:26:54,141 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:112:61:
2018-07-27 09:26:54,141 - isca - INFO - integer, intent(in) :: put_len, to_pe, get_len, from_pe
2018-07-27 09:26:54,141 - isca - INFO - 1
2018-07-27 09:26:54,141 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,141 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:113:52:
2018-07-27 09:26:54,141 - isca - INFO - MPP_TYPE_, intent(in)  :: put_data(:,:,:,:,:)
2018-07-27 09:26:54,141 - isca - INFO - 1
2018-07-27 09:26:54,141 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,141 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:114:52:
2018-07-27 09:26:54,141 - isca - INFO - MPP_TYPE_, intent(out) :: get_data(:,:,:,:,:)
2018-07-27 09:26:54,142 - isca - INFO - 1
2018-07-27 09:26:54,142 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,142 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:115:44:
2018-07-27 09:26:54,142 - isca - INFO - logical, intent(in), optional :: block
2018-07-27 09:26:54,142 - isca - INFO - 1
2018-07-27 09:26:54,142 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,142 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:116:42:
2018-07-27 09:26:54,142 - isca - INFO - integer, intent(in), optional :: tag
2018-07-27 09:26:54,142 - isca - INFO - 1
2018-07-27 09:26:54,142 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,142 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:117:66:
2018-07-27 09:26:54,142 - isca - INFO - integer, intent(out), optional :: recv_request, send_request
2018-07-27 09:26:54,142 - isca - INFO - 1
2018-07-27 09:26:54,142 - isca - INFO - Error: Unexpected data declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,142 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:118:39:
2018-07-27 09:26:54,142 - isca - INFO - MPP_TYPE_ :: put_data1D(put_len), get_data1D(get_len)
2018-07-27 09:26:54,142 - isca - INFO - 1
2018-07-27 09:26:54,142 - isca - INFO - Error: Explicit shaped array with nonconstant bounds at (1)
2018-07-27 09:26:54,143 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:120:33:
2018-07-27 09:26:54,143 - isca - INFO - pointer( ptrp, put_data1D )
2018-07-27 09:26:54,143 - isca - INFO - 1
2018-07-27 09:26:54,143 - isca - INFO - Error: Unexpected attribute declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,143 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:121:33:
2018-07-27 09:26:54,143 - isca - INFO - pointer( ptrg, get_data1D )
2018-07-27 09:26:54,143 - isca - INFO - 1
2018-07-27 09:26:54,143 - isca - INFO - Error: Unexpected attribute declaration statement in CONTAINS section at (1)
2018-07-27 09:26:54,143 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:122:26:
2018-07-27 09:26:54,143 - isca - INFO - ptrp = LOC(put_data)
2018-07-27 09:26:54,143 - isca - INFO - 1
2018-07-27 09:26:54,143 - isca - INFO - Error: Unexpected assignment statement in CONTAINS section at (1)
2018-07-27 09:26:54,143 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:123:26:
2018-07-27 09:26:54,143 - isca - INFO - ptrg = LOC(get_data)
2018-07-27 09:26:54,143 - isca - INFO - 1
2018-07-27 09:26:54,143 - isca - INFO - Error: Unexpected assignment statement in CONTAINS section at (1)
2018-07-27 09:26:54,143 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:125:79:
2018-07-27 09:26:54,143 - isca - INFO - recv_request=recv_request, send_request=send_request )
2018-07-27 09:26:54,144 - isca - INFO - 1
2018-07-27 09:26:54,144 - isca - INFO - Error: Unexpected CALL statement in CONTAINS section at (1)
2018-07-27 09:26:54,144 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:127:12:
2018-07-27 09:26:54,144 - isca - INFO - return
2018-07-27 09:26:54,144 - isca - INFO - 1
2018-07-27 09:26:54,144 - isca - INFO - Error: Unexpected RETURN statement in CONTAINS section at (1)
2018-07-27 09:26:54,144 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:128:7:
2018-07-27 09:26:54,144 - isca - INFO - end subroutine MPP_TRANSMIT_5D_
2018-07-27 09:26:54,144 - isca - INFO - 1
2018-07-27 09:26:54,144 - isca - INFO - Error: Expecting END MODULE statement at (1)
2018-07-27 09:26:54,153 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:111:39:
2018-07-27 09:26:54,153 - isca - INFO - subroutine MPP_TRANSMIT_5D_( put_data, put_len, to_pe, get_data, get_len, from_pe, block, tag, recv_request, send_request )
2018-07-27 09:26:54,153 - isca - INFO - 1
2018-07-27 09:26:54,153 - isca - INFO - Error: Procedure ‘mpp_transmit_logical4_5d’ in generic interface 'mpp_transmit' at (1) is neither function nor subroutine
2018-07-27 09:26:54,160 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:280:103:
2018-07-27 09:26:54,160 - isca - INFO - call mpp_transmit( put_data, put_len, to_pe, dummy, 1, NULL_PE, tag = tag, send_request=request )
2018-07-27 09:26:54,160 - isca - INFO - 1
2018-07-27 09:26:54,160 - isca - INFO - Error: There is no specific subroutine for the generic ‘mpp_transmit’ at (1)
2018-07-27 09:26:54,160 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:270:107:
2018-07-27 09:26:54,160 - isca - INFO - call mpp_transmit( dummy, 1, NULL_PE, get_data, get_len, from_pe, block, tag, recv_request=request  )
2018-07-27 09:26:54,160 - isca - INFO - 1
2018-07-27 09:26:54,160 - isca - INFO - Error: There is no specific subroutine for the generic ‘mpp_transmit’ at (1)
2018-07-27 09:26:54,160 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:258:103:
2018-07-27 09:26:54,160 - isca - INFO - call mpp_transmit( put_data, put_len, to_pe, dummy, 1, NULL_PE, tag = tag, send_request=request )
2018-07-27 09:26:54,160 - isca - INFO - 1
2018-07-27 09:26:54,160 - isca - INFO - Error: There is no specific subroutine for the generic ‘mpp_transmit’ at (1)
2018-07-27 09:26:54,160 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:248:107:
2018-07-27 09:26:54,160 - isca - INFO - call mpp_transmit( dummy, 1, NULL_PE, get_data, get_len, from_pe, block, tag, recv_request=request  )
2018-07-27 09:26:54,161 - isca - INFO - 1
2018-07-27 09:26:54,161 - isca - INFO - Error: There is no specific subroutine for the generic ‘mpp_transmit’ at (1)
2018-07-27 09:26:54,161 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:236:103:
2018-07-27 09:26:54,161 - isca - INFO - call mpp_transmit( put_data, put_len, to_pe, dummy, 1, NULL_PE, tag = tag, send_request=request )
2018-07-27 09:26:54,161 - isca - INFO - 1
2018-07-27 09:26:54,161 - isca - INFO - Error: There is no specific subroutine for the generic ‘mpp_transmit’ at (1)
2018-07-27 09:26:54,161 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:226:107:
2018-07-27 09:26:54,161 - isca - INFO - call mpp_transmit( dummy, 1, NULL_PE, get_data, get_len, from_pe, block, tag, recv_request=request  )
2018-07-27 09:26:54,161 - isca - INFO - 1
2018-07-27 09:26:54,161 - isca - INFO - Error: There is no specific subroutine for the generic ‘mpp_transmit’ at (1)
2018-07-27 09:26:54,161 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:214:103:
2018-07-27 09:26:54,161 - isca - INFO - call mpp_transmit( put_data, put_len, to_pe, dummy, 1, NULL_PE, tag = tag, send_request=request )
2018-07-27 09:26:54,161 - isca - INFO - 1
2018-07-27 09:26:54,161 - isca - INFO - Error: There is no specific subroutine for the generic ‘mpp_transmit’ at (1)
2018-07-27 09:26:54,161 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:204:106:
2018-07-27 09:26:54,162 - isca - INFO - call mpp_transmit( dummy, 1, NULL_PE, get_data, get_len, from_pe, block, tag, recv_request=request )
2018-07-27 09:26:54,162 - isca - INFO - 1
2018-07-27 09:26:54,162 - isca - INFO - Error: There is no specific subroutine for the generic ‘mpp_transmit’ at (1)
2018-07-27 09:26:54,162 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:280:103:
2018-07-27 09:26:54,162 - isca - INFO - call mpp_transmit( put_data, put_len, to_pe, dummy, 1, NULL_PE, tag = tag, send_request=request )
2018-07-27 09:26:54,162 - isca - INFO - 1
2018-07-27 09:26:54,162 - isca - INFO - Error: There is no specific subroutine for the generic ‘mpp_transmit’ at (1)
2018-07-27 09:26:54,162 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:270:107:
2018-07-27 09:26:54,162 - isca - INFO - call mpp_transmit( dummy, 1, NULL_PE, get_data, get_len, from_pe, block, tag, recv_request=request  )
2018-07-27 09:26:54,162 - isca - INFO - 1
2018-07-27 09:26:54,162 - isca - INFO - Error: There is no specific subroutine for the generic ‘mpp_transmit’ at (1)
2018-07-27 09:26:54,163 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:258:103:
2018-07-27 09:26:54,163 - isca - INFO - call mpp_transmit( put_data, put_len, to_pe, dummy, 1, NULL_PE, tag = tag, send_request=request )
2018-07-27 09:26:54,163 - isca - INFO - 1
2018-07-27 09:26:54,163 - isca - INFO - Error: There is no specific subroutine for the generic ‘mpp_transmit’ at (1)
2018-07-27 09:26:54,163 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:248:107:
2018-07-27 09:26:54,163 - isca - INFO - call mpp_transmit( dummy, 1, NULL_PE, get_data, get_len, from_pe, block, tag, recv_request=request  )
2018-07-27 09:26:54,163 - isca - INFO - 1
2018-07-27 09:26:54,163 - isca - INFO - Error: There is no specific subroutine for the generic ‘mpp_transmit’ at (1)
2018-07-27 09:26:54,163 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:236:103:
2018-07-27 09:26:54,163 - isca - INFO - call mpp_transmit( put_data, put_len, to_pe, dummy, 1, NULL_PE, tag = tag, send_request=request )
2018-07-27 09:26:54,163 - isca - INFO - 1
2018-07-27 09:26:54,163 - isca - INFO - Error: There is no specific subroutine for the generic ‘mpp_transmit’ at (1)
2018-07-27 09:26:54,163 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:226:107:
2018-07-27 09:26:54,163 - isca - INFO - call mpp_transmit( dummy, 1, NULL_PE, get_data, get_len, from_pe, block, tag, recv_request=request  )
2018-07-27 09:26:54,163 - isca - INFO - 1
2018-07-27 09:26:54,163 - isca - INFO - Error: There is no specific subroutine for the generic ‘mpp_transmit’ at (1)
2018-07-27 09:26:54,163 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:214:103:
2018-07-27 09:26:54,163 - isca - INFO - call mpp_transmit( put_data, put_len, to_pe, dummy, 1, NULL_PE, tag = tag, send_request=request )
2018-07-27 09:26:54,164 - isca - INFO - 1
2018-07-27 09:26:54,164 - isca - INFO - Error: There is no specific subroutine for the generic ‘mpp_transmit’ at (1)
2018-07-27 09:26:54,164 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:204:106:
2018-07-27 09:26:54,164 - isca - INFO - call mpp_transmit( dummy, 1, NULL_PE, get_data, get_len, from_pe, block, tag, recv_request=request )
2018-07-27 09:26:54,164 - isca - INFO - 1
2018-07-27 09:26:54,164 - isca - INFO - Error: There is no specific subroutine for the generic ‘mpp_transmit’ at (1)
2018-07-27 09:26:54,164 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:280:103:
2018-07-27 09:26:54,164 - isca - INFO - call mpp_transmit( put_data, put_len, to_pe, dummy, 1, NULL_PE, tag = tag, send_request=request )
2018-07-27 09:26:54,164 - isca - INFO - 1
2018-07-27 09:26:54,164 - isca - INFO - Error: There is no specific subroutine for the generic ‘mpp_transmit’ at (1)
2018-07-27 09:26:54,164 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:270:107:
2018-07-27 09:26:54,164 - isca - INFO - call mpp_transmit( dummy, 1, NULL_PE, get_data, get_len, from_pe, block, tag, recv_request=request  )
2018-07-27 09:26:54,164 - isca - INFO - 1
2018-07-27 09:26:54,164 - isca - INFO - Error: There is no specific subroutine for the generic ‘mpp_transmit’ at (1)
2018-07-27 09:26:54,164 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:258:103:
2018-07-27 09:26:54,164 - isca - INFO - call mpp_transmit( put_data, put_len, to_pe, dummy, 1, NULL_PE, tag = tag, send_request=request )
2018-07-27 09:26:54,164 - isca - INFO - 1
2018-07-27 09:26:54,164 - isca - INFO - Error: There is no specific subroutine for the generic ‘mpp_transmit’ at (1)
2018-07-27 09:26:54,165 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:248:107:
2018-07-27 09:26:54,165 - isca - INFO - call mpp_transmit( dummy, 1, NULL_PE, get_data, get_len, from_pe, block, tag, recv_request=request  )
2018-07-27 09:26:54,165 - isca - INFO - 1
2018-07-27 09:26:54,165 - isca - INFO - Error: There is no specific subroutine for the generic ‘mpp_transmit’ at (1)
2018-07-27 09:26:54,165 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:236:103:
2018-07-27 09:26:54,165 - isca - INFO - call mpp_transmit( put_data, put_len, to_pe, dummy, 1, NULL_PE, tag = tag, send_request=request )
2018-07-27 09:26:54,165 - isca - INFO - 1
2018-07-27 09:26:54,165 - isca - INFO - Error: There is no specific subroutine for the generic ‘mpp_transmit’ at (1)
2018-07-27 09:26:54,165 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:226:107:
2018-07-27 09:26:54,165 - isca - INFO - call mpp_transmit( dummy, 1, NULL_PE, get_data, get_len, from_pe, block, tag, recv_request=request  )
2018-07-27 09:26:54,165 - isca - INFO - 1
2018-07-27 09:26:54,165 - isca - INFO - Error: There is no specific subroutine for the generic ‘mpp_transmit’ at (1)
2018-07-27 09:26:54,165 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:214:103:
2018-07-27 09:26:54,165 - isca - INFO - call mpp_transmit( put_data, put_len, to_pe, dummy, 1, NULL_PE, tag = tag, send_request=request )
2018-07-27 09:26:54,165 - isca - INFO - 1
2018-07-27 09:26:54,165 - isca - INFO - Error: There is no specific subroutine for the generic ‘mpp_transmit’ at (1)
2018-07-27 09:26:54,165 - isca - INFO - /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/code/src/shared/mpp/include/mpp_transmit.inc:204:106:
2018-07-27 09:26:54,165 - isca - INFO - call mpp_transmit( dummy, 1, NULL_PE, get_data, get_len, from_pe, block, tag, recv_request=request )
2018-07-27 09:26:54,166 - isca - INFO - 1
2018-07-27 09:26:54,166 - isca - INFO - Error: There is no specific subroutine for the generic ‘mpp_transmit’ at (1)
2018-07-27 09:26:54,169 - isca - WARNING - f951: some warnings being treated as errors
2018-07-27 09:26:54,171 - isca - INFO - make: *** [Makefile:145: mpp.o] Error 1
2018-07-27 09:26:54,173 - isca - INFO - ERROR: mkmf failed for isca.x
Exception in thread background thread for pid 1627:
Traceback (most recent call last):
  File "/usr/lib/python3.6/threading.py", line 916, in _bootstrap_inner
    self.run()
  File "/usr/lib/python3.6/threading.py", line 864, in run
    self._target(*self._args, **self._kwargs)
  File "/home/yaman/Py_Lab/lib/python3.6/site-packages/sh.py", line 1540, in wrap
    fn(*args, **kwargs)
  File "/home/yaman/Py_Lab/lib/python3.6/site-packages/sh.py", line 2459, in background_thread
    handle_exit_code(exit_code)
  File "/home/yaman/Py_Lab/lib/python3.6/site-packages/sh.py", line 2157, in fn
    return self.command.handle_command_exit_code(exit_code)
  File "/home/yaman/Py_Lab/lib/python3.6/site-packages/sh.py", line 815, in handle_command_exit_code
    raise exc
sh.ErrorReturnCode_1: 

  RAN: /usr/bin/bash /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/build/isca/compile.sh

  STDOUT:
/home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/build/isca/compile.sh: line 21: module: command not found
loadmodules for drybiscuit
/home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/build/isca/compile.sh: line 23: module: command not found
Compiling postprocessing tools
loadmodules for drybiscuit
/usr/bin/ld: mppnccombine.o: undefined reference to symbol 'ncvarget'
/usr/lib/libnetcdf.so: error adding symbols: DSO missing from command line
collect2: error: ld returned 1 exit status
ERROR: could not compile combine tool
ln: failed to create symbolic link '/home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/build/isca/mppnccombine.x': File exists
ln: failed to create symbolic link '/... (87187 more, please see e.stdout)

  STDERR:

Traceback (most recent call last):
  File "giant_planet_test_case.py", line 22, in <module>
    cb.compile()  # compile the source code to working directory $GFDL_WORK/codebase
  File "/home/yaman/Testsite/Isca/src/extra/python/isca/helpers.py", line 38, in _useworkdir
    return fn(*args, **kwargs)
  File "/home/yaman/Testsite/Isca/src/extra/python/isca/helpers.py", line 22, in _destructive
    return fn(*args, **kwargs)
  File "/home/yaman/Testsite/Isca/src/extra/python/isca/codebase.py", line 255, in compile
    for line in sh.bash(P(self.builddir, 'compile.sh'), _iter=True, _err_to_out=True):
  File "/home/yaman/Py_Lab/lib/python3.6/site-packages/sh.py", line 863, in next
    self.wait()
  File "/home/yaman/Py_Lab/lib/python3.6/site-packages/sh.py", line 792, in wait
    self.handle_command_exit_code(exit_code)
  File "/home/yaman/Py_Lab/lib/python3.6/site-packages/sh.py", line 815, in handle_command_exit_code
    raise exc
sh.ErrorReturnCode_1: 

  RAN: /usr/bin/bash /home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/build/isca/compile.sh

  STDOUT:
/home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/build/isca/compile.sh: line 21: module: command not found
loadmodules for drybiscuit
/home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/build/isca/compile.sh: line 23: module: command not found
Compiling postprocessing tools
loadmodules for drybiscuit
/usr/bin/ld: mppnccombine.o: undefined reference to symbol 'ncvarget'
/usr/lib/libnetcdf.so: error adding symbols: DSO missing from command line
collect2: error: ld returned 1 exit status
ERROR: could not compile combine tool
ln: failed to create symbolic link '/home/yaman/Testsite/Isca/Work_Dir/codebase/_home_yaman_Testsite_Isca/build/isca/mppnccombine.x': File exists
ln: failed to create symbolic link '/... (87187 more, please see e.stdout)

  STDERR:

jamesp commented 6 years ago

could you try changing export GFDL_COMPILER=gfortran to export GFDL_COMPILER=gfort?

This needs to be tidied up a bit, but I've already done the porting of compiler flags from ifort to gfort, setting that variable should load the necessary template.

wreckdump commented 6 years ago

I did try changing export GFDL_COMPILER=gfortran to export GFDL_COMPILER=gfort

and it had a same result...

jamesp commented 6 years ago

setting that env var should tell the framework to use this template: https://github.com/jamesp/Isca/blob/docker/src/extra/python/isca/templates/mkmf.template.gfort, which has the correct set of flags.

jamesp commented 6 years ago

It is used at this line in compile.sh: https://github.com/jamesp/Isca/blob/3caee140aff2dd21583e73720e57ee43b0e5ab88/src/extra/python/isca/templates/compile.sh#L11

Do you see the same at L11 in src/extra/python/isca/templates/compile.sh in your working copy?

jamesp commented 6 years ago

please make sure you're using the docker branch from my fork, the gfortran support is not yet available on the Execlim/isca master

wreckdump commented 6 years ago

Oh okay! I'll try this and get back to you!

For your information, L11 of src/extra/python/isca/templates/compile.sh was located in L7 as...

template={{ template_dir }}/mkmf.template.ia64

Thanks!

wreckdump commented 6 years ago

It seems to be working as in the compilation works with a few error messages saying...


2018-07-27 10:23:59,521 - isca - WARNING - Warning: Extension: Conversion from INTEGER(4) to LOGICAL(4) at (1)
2018-07-27 10:23:59,522 - isca - WARNING - Warning: Extension: Conversion from INTEGER(4) to LOGICAL(8) at (1)
2018-07-27 10:26:22,409 - isca - WARNING - Warning: Legacy Extension: REAL array index at (1)

but I still have netCDF problem like the following


2018-07-27 10:23:53,301 - isca - INFO - /usr/bin/ld: mppnccombine.o: undefined reference to symbol 'ncvarget'
2018-07-27 10:23:53,301 - isca - INFO - /usr/lib/libnetcdf.so: error adding symbols: DSO missing from command line
2018-07-27 10:23:53,301 - isca - INFO - collect2: error: ld returned 1 exit status

sit23 commented 6 years ago

Hi @wreckdump - yes, those warnings are things we've seen before, so no problem there.

Regarding your netcdf issue, could you send us the output of the following command? nc-config --cflags --libs

wreckdump commented 6 years ago

Sure. I am getting the following


$ nc-config --cflags --libs
-I/usr/include -D_FORTIFY_SOURCE=2
-L/usr/lib -lnetcdf

sit23 commented 6 years ago

OK thanks. A couple more questions -

What type of computer are you using (linux , mac etc)?
Could you send us the output of running the model as it is now?
Could you send us the output of nc-config --version

wreckdump commented 6 years ago

Archlinux (Kernel version 4.16.8-10)
You mean isca.x? or the python script?

for isca.x

NOTE: MPP_DOMAINS_SET_STACK_SIZE: stack size set to    32768.
&MPP_IO_NML
 HEADER_BUFFER_VAL=16384      ,
 GLOBAL_FIELD_ON_ROOT_PE=T,
 IO_CLOCKS_ON=F,
 SHUFFLE=0          ,
 DEFLATE_LEVEL=-1         ,
 /
NOTE: MPP_IO_SET_STACK_SIZE: stack size set to     131072.
NOTE: MPP_DOMAINS_SET_STACK_SIZE: stack size set to   620000.
  starting            1  OpenMP threads per MPI-task
ATMOS MODEL DOMAIN DECOMPOSITION
  X-AXIS = 1024
  Y-AXIS =  320

FATAL: MPP_DO_GLOBAL_FIELD user stack overflow: call mpp_domains_set_stack_size(  655360) from all PEs.

FATAL: MPP_DO_GLOBAL_FIELD user stack overflow: call mpp_domains_set_stack_size(  655360) from all PEs.

--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 1.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------

for python script in $GDFL_BASE/exp/test_cases/giant_planet

... all the compilations ....

2018-07-27 10:33:44,462 - isca - INFO - make: 'isca.x' is up to date.
2018-07-27 10:33:44,463 - isca - INFO - Compilation complete.
2018-07-27 10:33:44,464 - isca - DEBUG - Making directory '/home/yaman/Testsite/Isca/Work_Dir/experiment/giant_planet_test_experiment'
2018-07-27 10:33:44,474 - isca - WARNING - Tried to remove run directory but it doesnt exist
2018-07-27 10:33:44,480 - isca - INFO - Emptied run directory '/home/yaman/Testsite/Isca/Work_Dir/experiment/giant_planet_test_experiment/run'
2018-07-27 10:33:44,490 - isca - INFO - Emptied run directory '/home/yaman/Testsite/Isca/Work_Dir/experiment/giant_planet_test_experiment/run'
2018-07-27 10:33:45,486 - isca - INFO - Writing namelist to '/home/yaman/Testsite/Isca/Work_Dir/experiment/giant_planet_test_experiment/run/input.nml'
2018-07-27 10:33:45,488 - isca - INFO - Writing field_table to '/home/yaman/Testsite/Isca/Work_Dir/experiment/giant_planet_test_experiment/run/field_table'
2018-07-27 10:33:45,494 - isca - INFO - Writing diag_table to '/home/yaman/Testsite/Isca/Work_Dir/experiment/giant_planet_test_experiment/run/diag_table'
2018-07-27 10:33:45,495 - isca - INFO - Running without restart file
2018-07-27 10:33:45,502 - isca - INFO - Beginning run 1
2018-07-27 10:33:45,507 - isca - INFO - process running as 3095
2018-07-27 10:33:45,509 - isca - DEBUG - /home/yaman/Testsite/Isca/Work_Dir/experiment/giant_planet_test_experiment/run/run.sh: line 6: module: command not found
2018-07-27 10:33:45,509 - isca - DEBUG - loadmodules for drybiscuit
2018-07-27 10:33:45,565 - isca - DEBUG - /home/yaman/Testsite/Isca/Work_Dir/experiment/giant_planet_test_experiment/run/run.sh: line 8: module: command not found
2018-07-27 10:33:45,789 - isca - DEBUG - NOTE from PE    0: MPP_DOMAINS_SET_STACK_SIZE: stack size set to    32768.
2018-07-27 10:33:45,789 - isca - DEBUG - &MPP_IO_NML
2018-07-27 10:33:45,789 - isca - DEBUG - HEADER_BUFFER_VAL=16384      ,
2018-07-27 10:33:45,789 - isca - DEBUG - GLOBAL_FIELD_ON_ROOT_PE=T,
2018-07-27 10:33:45,789 - isca - DEBUG - IO_CLOCKS_ON=F,
2018-07-27 10:33:45,789 - isca - DEBUG - SHUFFLE=0          ,
2018-07-27 10:33:45,789 - isca - DEBUG - DEFLATE_LEVEL=-1         ,
2018-07-27 10:33:45,789 - isca - DEBUG - /
2018-07-27 10:33:45,790 - isca - DEBUG - NOTE from PE    0: MPP_IO_SET_STACK_SIZE: stack size set to     131072.
2018-07-27 10:33:45,791 - isca - DEBUG - NOTE from PE    0: MPP_DOMAINS_SET_STACK_SIZE: stack size set to   620000.
2018-07-27 10:33:45,792 - isca - DEBUG - starting            1  OpenMP threads per MPI-task
2018-07-27 10:33:45,793 - isca - DEBUG - ATMOS MODEL DOMAIN DECOMPOSITION
2018-07-27 10:33:45,794 - isca - DEBUG - X-AXIS = 1024
2018-07-27 10:33:45,794 - isca - DEBUG - Y-AXIS =   80  80  80  80
2018-07-27 10:33:47,580 - isca - DEBUG - mean surface pressure=3000.0000 mb
2018-07-27 10:33:48,419 - isca - DEBUG - NOTE from PE    0: idealized_moist_phys: Using dry convection scheme.
2018-07-27 10:33:48,444 - isca - DEBUG - 
2018-07-27 10:33:48,444 - isca - DEBUG - 
2018-07-27 10:33:48,444 - isca - DEBUG - Rayleigh Drag in boundary layer.
2018-07-27 10:33:48,444 - isca - DEBUG - Extent of frictional layer: sigma_b =     0.85
2018-07-27 10:33:48,444 - isca - DEBUG - Frictional timescale in days:     10.00
2018-07-27 10:33:48,444 - isca - DEBUG - 
2018-07-27 10:33:48,444 - isca - DEBUG - 
2018-07-27 10:33:48,444 - isca - DEBUG - NOTE from PE    0: idealized_moist_phys: Because gp_surface=.True., setting albedo=0.0
2018-07-27 10:33:48,445 - isca - DEBUG - NOTE from PE    0: idealized_moist_phys: Note that if grey radiation scheme != Schneider is used, model will seg-fault b/c gp_surface does not define a t_surf, which is required by most grey schemes.
2018-07-27 10:33:48,468 - isca - DEBUG - NOTE from PE    0: two_stream_gray_rad: Using Schneider & Liu (2009) radiation scheme for GIANT PLANETS.
2018-07-27 10:33:49,259 - isca - DEBUG - 
2018-07-27 10:33:49,260 - isca - DEBUG - Program received signal SIGSEGV: Segmentation fault - invalid memory reference.
2018-07-27 10:33:49,260 - isca - DEBUG - 
2018-07-27 10:33:49,260 - isca - DEBUG - Backtrace for this error:
2018-07-27 10:33:49,261 - isca - DEBUG - 
2018-07-27 10:33:49,261 - isca - DEBUG - Program received signal SIGSEGV: Segmentation fault - invalid memory reference.
2018-07-27 10:33:49,261 - isca - DEBUG - 
2018-07-27 10:33:49,261 - isca - DEBUG - Backtrace for this error:
2018-07-27 10:33:49,325 - isca - DEBUG - #0  0x147fcdb238ef in ???
2018-07-27 10:33:49,326 - isca - DEBUG - #1  0x563043b3d7b0 in ???
2018-07-27 10:33:49,326 - isca - DEBUG - #2  0x563043f35c3b in ???
2018-07-27 10:33:49,326 - isca - DEBUG - #3  0x5630436d8685 in ???
2018-07-27 10:33:49,326 - isca - DEBUG - #4  0x563043f63e8e in ???
2018-07-27 10:33:49,326 - isca - DEBUG - #5  0x56304366d96e in ???
2018-07-27 10:33:49,326 - isca - DEBUG - #6  0x147fcdb1006a in ???
2018-07-27 10:33:49,326 - isca - DEBUG - #7  0x56304366d9a9 in ???
2018-07-27 10:33:49,326 - isca - DEBUG - #8  0xffffffffffffffff in ???
2018-07-27 10:33:49,326 - isca - DEBUG - #0  0x1482504b98ef in ???
2018-07-27 10:33:49,326 - isca - DEBUG - #1  0x557e326a37b0 in ???
2018-07-27 10:33:49,327 - isca - DEBUG - #2  0x557e32a9bc3b in ???
2018-07-27 10:33:49,327 - isca - DEBUG - #3  0x557e3223e685 in ???
2018-07-27 10:33:49,327 - isca - DEBUG - #4  0x557e32ac9e8e in ???
2018-07-27 10:33:49,327 - isca - DEBUG - #5  0x557e321d396e in ???
2018-07-27 10:33:49,327 - isca - DEBUG - #6  0x1482504a606a in ???
2018-07-27 10:33:49,327 - isca - DEBUG - #7  0x557e321d39a9 in ???
2018-07-27 10:33:49,327 - isca - DEBUG - #8  0xffffffffffffffff in ???
2018-07-27 10:33:49,559 - isca - DEBUG - 
2018-07-27 10:33:49,559 - isca - DEBUG - Program received signal SIGSEGV: Segmentation fault - invalid memory reference.
2018-07-27 10:33:49,559 - isca - DEBUG - 
2018-07-27 10:33:49,559 - isca - DEBUG - Backtrace for this error:
2018-07-27 10:33:49,564 - isca - DEBUG - 
2018-07-27 10:33:49,564 - isca - DEBUG - Program received signal SIGSEGV: Segmentation fault - invalid memory reference.
2018-07-27 10:33:49,564 - isca - DEBUG - 
2018-07-27 10:33:49,564 - isca - DEBUG - Backtrace for this error:
2018-07-27 10:33:49,585 - isca - DEBUG - #0  0x15196fc6e8ef in ???
2018-07-27 10:33:49,586 - isca - DEBUG - #1  0x562ccb0de7b0 in ???
2018-07-27 10:33:49,586 - isca - DEBUG - #2  0x562ccb4d6c3b in ???
2018-07-27 10:33:49,586 - isca - DEBUG - #3  0x562ccac79685 in ???
2018-07-27 10:33:49,586 - isca - DEBUG - #4  0x562ccb504e8e in ???
2018-07-27 10:33:49,586 - isca - DEBUG - #5  0x562ccac0e96e in ???
2018-07-27 10:33:49,586 - isca - DEBUG - #6  0x15196fc5b06a in ???
2018-07-27 10:33:49,586 - isca - DEBUG - #7  0x562ccac0e9a9 in ???
2018-07-27 10:33:49,586 - isca - DEBUG - #8  0xffffffffffffffff in ???
2018-07-27 10:33:49,590 - isca - DEBUG - #0  0x1513e76128ef in ???
2018-07-27 10:33:49,590 - isca - DEBUG - #1  0x56019e89a7b0 in ???
2018-07-27 10:33:49,590 - isca - DEBUG - #2  0x56019ec92c3b in ???
2018-07-27 10:33:49,590 - isca - DEBUG - #3  0x56019e435685 in ???
2018-07-27 10:33:49,590 - isca - DEBUG - #4  0x56019ecc0e8e in ???
2018-07-27 10:33:49,590 - isca - DEBUG - #5  0x56019e3ca96e in ???
2018-07-27 10:33:49,590 - isca - DEBUG - #6  0x1513e75ff06a in ???
2018-07-27 10:33:49,590 - isca - DEBUG - #7  0x56019e3ca9a9 in ???
2018-07-27 10:33:49,590 - isca - DEBUG - #8  0xffffffffffffffff in ???
2018-07-27 10:33:51,980 - isca - DEBUG - -------------------------------------------------------
2018-07-27 10:33:51,981 - isca - DEBUG - Primary job  terminated normally, but 1 process returned
2018-07-27 10:33:51,981 - isca - DEBUG - a non-zero exit code. Per user-direction, the job has been aborted.
2018-07-27 10:33:51,981 - isca - DEBUG - -------------------------------------------------------
2018-07-27 10:33:52,430 - isca - DEBUG - --------------------------------------------------------------------------
2018-07-27 10:33:52,431 - isca - DEBUG - mpirun noticed that process rank 0 with PID 0 on node drybiscuit exited on signal 11 (Segmentation fault).
2018-07-27 10:33:52,431 - isca - DEBUG - --------------------------------------------------------------------------
Exception in thread background thread for pid 3095:
Traceback (most recent call last):
  File "/usr/lib/python3.6/threading.py", line 916, in _bootstrap_inner
    self.run()
  File "/usr/lib/python3.6/threading.py", line 864, in run
    self._target(*self._args, **self._kwargs)
  File "/home/yaman/Py_Lab/lib/python3.6/site-packages/sh.py", line 1540, in wrap
    fn(*args, **kwargs)
  File "/home/yaman/Py_Lab/lib/python3.6/site-packages/sh.py", line 2459, in background_thread
    handle_exit_code(exit_code)
  File "/home/yaman/Py_Lab/lib/python3.6/site-packages/sh.py", line 2157, in fn
    return self.command.handle_command_exit_code(exit_code)
  File "/home/yaman/Py_Lab/lib/python3.6/site-packages/sh.py", line 815, in handle_command_exit_code
    raise exc
sh.ErrorReturnCode_139: 

  RAN: /usr/bin/bash /home/yaman/Testsite/Isca/Work_Dir/experiment/giant_planet_test_experiment/run/run.sh

  STDOUT:

  STDERR:

2018-07-27 10:33:52,621 - isca - ERROR - Run 1 failed. See log for details.
2018-07-27 10:33:52,622 - isca - ERROR - Error: ErrorReturnCode_139('\n\n  RAN: /usr/bin/bash /home/yaman/Testsite/Isca/Work_Dir/experiment/giant_planet_test_experiment/run/run.sh\n\n  STDOUT:\n\n\n  STDERR:\n',)
Traceback (most recent call last):
  File "/home/yaman/Testsite/Isca/src/extra/python/isca/experiment.py", line 266, in run
    proc.wait()
  File "/home/yaman/Py_Lab/lib/python3.6/site-packages/sh.py", line 792, in wait
    self.handle_command_exit_code(exit_code)
  File "/home/yaman/Py_Lab/lib/python3.6/site-packages/sh.py", line 815, in handle_command_exit_code
    raise exc
sh.ErrorReturnCode_139: 

  RAN: /usr/bin/bash /home/yaman/Testsite/Isca/Work_Dir/experiment/giant_planet_test_experiment/run/run.sh

  STDOUT:

  STDERR:

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "giant_planet_test_case.py", line 210, in <module>
    exp.run(1, use_restart=False, num_cores=NCORES)
  File "/home/yaman/Testsite/Isca/src/extra/python/isca/helpers.py", line 22, in _destructive
    return fn(*args, **kwargs)
  File "/home/yaman/Testsite/Isca/src/extra/python/isca/helpers.py", line 38, in _useworkdir
    return fn(*args, **kwargs)
  File "/home/yaman/Testsite/Isca/src/extra/python/isca/experiment.py", line 280, in run
    raise FailedRunError()
isca.experiment.FailedRunError

output of nc-config --version

$ nc-config --version
netCDF 4.5.0

jamesp commented 6 years ago

It looks like it is now compiling. Try applying this patch to the codebase #56 and re-running

jamesp commented 6 years ago

This is the important change: https://github.com/ExeClim/Isca/pull/56/files?utf8=✓&diff=split&w=1

wreckdump commented 6 years ago

Does this makefile script support multithreaded compilation?

sit23 commented 6 years ago

@wreckdump to add to what @jamesp said, we have seen this segmentation fault before with gfortran compilations, and the changes made in #56 do fix the segmentation fault. If you apply those changes, then Isca should run.

wreckdump commented 6 years ago

Still having issues with netCDF just like what I have posted earlier..


2018-07-27 10:23:53,301 - isca - INFO - /usr/bin/ld: mppnccombine.o: undefined reference to symbol 'ncvarget'
2018-07-27 10:23:53,301 - isca - INFO - /usr/lib/libnetcdf.so: error adding symbols: DSO missing from command line
2018-07-27 10:23:53,301 - isca - INFO - collect2: error: ld returned 1 exit status

Would this be a problem?

the model is running fine I guess.... , as I am seeing some 'operations' being currently running like the following ...

2018-07-27 11:21:15,684 - isca - INFO - make: 'isca.x' is up to date.
2018-07-27 11:21:15,685 - isca - INFO - Compilation complete.
2018-07-27 11:21:15,687 - isca - DEBUG - Making directory '/home/yaman/Testsite/Isca/Work_Dir/experiment/giant_planet_test_experiment'
2018-07-27 11:21:15,696 - isca - WARNING - Tried to remove run directory but it doesnt exist
2018-07-27 11:21:15,701 - isca - INFO - Emptied run directory '/home/yaman/Testsite/Isca/Work_Dir/experiment/giant_planet_test_experiment/run'
2018-07-27 11:21:15,713 - isca - INFO - Emptied run directory '/home/yaman/Testsite/Isca/Work_Dir/experiment/giant_planet_test_experiment/run'
2018-07-27 11:21:15,798 - isca - INFO - Writing namelist to '/home/yaman/Testsite/Isca/Work_Dir/experiment/giant_planet_test_experiment/run/input.nml'
2018-07-27 11:21:15,800 - isca - INFO - Writing field_table to '/home/yaman/Testsite/Isca/Work_Dir/experiment/giant_planet_test_experiment/run/field_table'
2018-07-27 11:21:15,805 - isca - INFO - Writing diag_table to '/home/yaman/Testsite/Isca/Work_Dir/experiment/giant_planet_test_experiment/run/diag_table'
2018-07-27 11:21:15,805 - isca - INFO - Running without restart file
2018-07-27 11:21:15,809 - isca - INFO - Beginning run 1
2018-07-27 11:21:15,813 - isca - INFO - process running as 4542
2018-07-27 11:21:15,815 - isca - DEBUG - /home/yaman/Testsite/Isca/Work_Dir/experiment/giant_planet_test_experiment/run/run.sh: line 6: module: command not found
2018-07-27 11:21:15,816 - isca - DEBUG - loadmodules for drybiscuit
2018-07-27 11:21:15,864 - isca - DEBUG - /home/yaman/Testsite/Isca/Work_Dir/experiment/giant_planet_test_experiment/run/run.sh: line 8: module: command not found
2018-07-27 11:21:15,984 - isca - DEBUG - NOTE from PE    0: MPP_DOMAINS_SET_STACK_SIZE: stack size set to    32768.
2018-07-27 11:21:15,984 - isca - DEBUG - &MPP_IO_NML
2018-07-27 11:21:15,984 - isca - DEBUG - HEADER_BUFFER_VAL=16384      ,
2018-07-27 11:21:15,984 - isca - DEBUG - GLOBAL_FIELD_ON_ROOT_PE=T,
2018-07-27 11:21:15,985 - isca - DEBUG - IO_CLOCKS_ON=F,
2018-07-27 11:21:15,985 - isca - DEBUG - SHUFFLE=0          ,
2018-07-27 11:21:15,985 - isca - DEBUG - DEFLATE_LEVEL=-1         ,
2018-07-27 11:21:15,985 - isca - DEBUG - /
2018-07-27 11:21:15,985 - isca - DEBUG - NOTE from PE    0: MPP_IO_SET_STACK_SIZE: stack size set to     131072.
2018-07-27 11:21:15,985 - isca - DEBUG - NOTE from PE    0: MPP_DOMAINS_SET_STACK_SIZE: stack size set to   620000.
2018-07-27 11:21:15,987 - isca - DEBUG - starting            1  OpenMP threads per MPI-task
2018-07-27 11:21:15,988 - isca - DEBUG - ATMOS MODEL DOMAIN DECOMPOSITION
2018-07-27 11:21:15,988 - isca - DEBUG - X-AXIS = 1024
2018-07-27 11:21:15,989 - isca - DEBUG - Y-AXIS =   80  80  80  80
2018-07-27 11:21:18,138 - isca - DEBUG - mean surface pressure=3000.0000 mb
2018-07-27 11:21:18,979 - isca - DEBUG - NOTE from PE    0: idealized_moist_phys: Using dry convection scheme.
2018-07-27 11:21:19,003 - isca - DEBUG - 
2018-07-27 11:21:19,003 - isca - DEBUG - 
2018-07-27 11:21:19,003 - isca - DEBUG - Rayleigh Drag in boundary layer.
2018-07-27 11:21:19,003 - isca - DEBUG - Extent of frictional layer: sigma_b =     0.85
2018-07-27 11:21:19,003 - isca - DEBUG - Frictional timescale in days:     10.00
2018-07-27 11:21:19,003 - isca - DEBUG - 
2018-07-27 11:21:19,003 - isca - DEBUG - 
2018-07-27 11:21:19,003 - isca - DEBUG - NOTE from PE    0: idealized_moist_phys: Because gp_surface=.True., setting albedo=0.0
2018-07-27 11:21:19,003 - isca - DEBUG - NOTE from PE    0: idealized_moist_phys: Note that if grey radiation scheme != Schneider is used, model will seg-fault b/c gp_surface does not define a t_surf, which is required by most grey schemes.
2018-07-27 11:21:19,026 - isca - DEBUG - NOTE from PE    0: two_stream_gray_rad: Using Schneider & Liu (2009) radiation scheme for GIANT PLANETS.
2018-07-27 11:25:30,162 - isca - DEBUG - Integration completed through     1 days     0 seconds
2018-07-27 11:29:40,029 - isca - DEBUG - Integration completed through     2 days     0 seconds

and still running ...

Another question on running the model. Where can I tweak the number of threads (or processes)?

Thanks.

sit23 commented 6 years ago

OK - good. So Isca is compiling and running fine. That's good news. The problem you are seeing is with the compilation of the script mppnccombine.x, which is an offline script somewhat separate from the model itself, so will not affect the running of the model. The script is necessary when post-processing the model data, as it joins together the output files produced by each core into a single output file per execution of exp.run.

The script used to compile mppnccombine.x is: Isca/postprocessing/compile_mppn.sh You can run this separately and debug it there. You should finds this produces similar error messages as you posted above. Let us know how you get on with running that script. We've had it running OK on our multiple systems with gfortran, so this might be an issue you'll need to try and fix for your own machine.

jamesp commented 6 years ago

This seems to be a site specific compilation issue. I'm closing for now.

ExeClim / Isca

compile error : mpi and netcdf #58