Closed jan-petr closed 2 years ago
{'Siemens_PASL_2DEPI_VB15A_ADNI2_941_S_4764_1' } {'rawdata' } {'Missing folder' } {'/sub-Sub1/anat' }
{'Siemens_PASL_2DEPI_VB15A_ADNI2_941_S_4764_1' } {'rawdata' } {'Missing file' } {'/sub-Sub1/anat/sub-Sub1_FLAIR.json' }
{'Siemens_PASL_2DEPI_VB15A_ADNI2_941_S_4764_1' } {'rawdata' } {'Missing file' } {'/sub-Sub1/anat/sub-Sub1_FLAIR.nii.gz' }
{'Siemens_PASL_2DEPI_VB15A_ADNI2_941_S_4764_1' } {'rawdata' } {'Missing file' } {'/sub-Sub1/anat/sub-Sub1_T1w.json' }
{'Siemens_PASL_2DEPI_VB15A_ADNI2_941_S_4764_1' } {'rawdata' } {'Missing file' } {'/sub-Sub1/anat/sub-Sub1_T1w.nii.gz' }
{'Siemens_PASL_2DEPI_VB15A_ADNI2_941_S_4764_1' } {'rawdata' } {'Missing file' } {'/sub-Sub1/perf/sub-Sub1_asl.json' }
{'Siemens_PASL_2DEPI_VB15A_ADNI2_941_S_4764_1' } {'rawdata' } {'Missing file' } {'/sub-Sub1/perf/sub-Sub1_asl.nii.gz' }
{'Siemens_PASL_2DEPI_VB15A_ADNI2_941_S_4764_1' } {'rawdata' } {'Missing file' } {'/sub-Sub1/perf/sub-Sub1_aslcontext.tsv' }
{'GE_PCASL_3Dspiral_25.0LX_ADNI3_027_S_5079_1' } {'derivativesReference'} {'Missing file' } {'/ExploreASL/sub-001/ASL_1/ASL4D_Source.json' }
{'GE_PCASL_3Dspiral_25.0LX_ADNI3_027_S_5079_1' } {'derivativesReference'} {'Missing file' } {'/ExploreASL/sub-001/ASL_1/ASL4D_Source.nii.gz' }
{'GE_PCASL_3Dspiral_25.0LX_ADNI3_027_S_5079_1' } {'derivativesReference'} {'Missing file' } {'/ExploreASL/sub-001/ASL_1/ASL4Dcontext_Source.tsv' }
{'GE_PCASL_3Dspiral_25.0LX_ADNI3_027_S_5079_1' } {'derivativesReference'} {'Missing file' } {'/ExploreASL/sub-001/ASL_1/M0.json' }
{'GE_PCASL_3Dspiral_25.0LX_ADNI3_027_S_5079_1' } {'derivativesReference'} {'Missing file' } {'/ExploreASL/sub-001/ASL_1/M0.nii.gz' }
{'GE_PCASL_3Dspiral_25.0LX_ADNI3_027_S_5079_1' } {'Both' } {'Different file content'} {'Different file content: /ExploreASL/sub-001/ASL_1/ASL4D.json' }
{'GE_PCASL_3Dspiral_25.0LX_ADNI3_027_S_5079_1' } {'Both' } {'Different file content'} {'RMSE of NIFTIs above threshold: /ExploreASL/sub-001/ASL_1/ASL4D.nii.gz'}
{'GE_PCASL_3Dspiral_25.0LX_ADNI3_027_S_5079_1' } {'Both' } {'Different file content'} {'Matrix dimensions do not agree: /ExploreASL/sub-001/ASL_1/ASL4D.nii.gz'}
{'GE_PCASL_3Dspiral_25.0LX_ADNI3_027_S_5079_1' } {'Both' } {'Different file content'} {'Different file content: /ExploreASL/sub-001/ASL_1/ASL4Dcontext.tsv' }
{'Philips_PASL_2DEPI_5.4.1.0_ADNI3_006_S_6681_1'} {'Both' } {'Different file content'} {'Different file content: /ExploreASL/sub-001/ASL_1/ASL4D.json' }
{'Philips_PCASL_2DEPI_PARREC_1' } {'Both' } {'Different file content'} {'Different file content: /ExploreASL/sub-Sub01/ASL_1/ASL4D.json' }
{'Philips_PCASL_3DGRASE_5.6.1.1_CBFonly_1' } {'Both' } {'Different file content'} {'Different file content: /ExploreASL/sub-001_1/ASL_1/ASL4D.json' }
{'Siemens_PASL_2DEPI_VB15A_ADNI2_941_S_4764_1' } {'derivativesReference'} {'Missing folder' } {'/ExploreASL/temp' }
{'Siemens_PASL_2DEPI_VB15A_ADNI2_941_S_4764_1' } {'derivatives' } {'Missing folder' } {'/ExploreASL/sub-Sub1_1/ASL_1' }
{'Siemens_PASL_2DEPI_VB15A_ADNI2_941_S_4764_1' } {'derivativesReference'} {'Missing file' } {'/ExploreASL/temp/dcm2niiCatchedErrors.json' }
{'Siemens_PASL_2DEPI_VB15A_ADNI2_941_S_4764_1' } {'derivativesReference'} {'Missing file' } {'/ExploreASL/temp/dcm2niiCatchedErrors.mat' }
{'Siemens_PASL_2DEPI_VB15A_ADNI2_941_S_4764_1' } {'derivatives' } {'Missing file' } {'/ExploreASL/sub-Sub1_1/ASL_1/ASL4D.json' }
{'Siemens_PASL_2DEPI_VB15A_ADNI2_941_S_4764_1' } {'derivatives' } {'Missing file' } {'/ExploreASL/sub-Sub1_1/ASL_1/ASL4D.nii.gz' }
{'Siemens_PASL_2DEPI_VB15A_ADNI2_941_S_4764_1' } {'derivatives' } {'Missing file' } {'/ExploreASL/sub-Sub1_1/ASL_1/ASL4D_Source.json' }
{'Siemens_PASL_2DEPI_VB15A_ADNI2_941_S_4764_1' } {'derivatives' } {'Missing file' } {'/ExploreASL/sub-Sub1_1/ASL_1/ASL4D_Source.nii.gz' }
{'Siemens_PASL_2DEPI_VB15A_ADNI2_941_S_4764_1' } {'derivatives' } {'Missing file' } {'/ExploreASL/sub-Sub1_1/ASL_1/ASL4Dcontext.tsv' }
{'Siemens_PASL_2DEPI_VB15A_ADNI2_941_S_4764_1' } {'derivatives' } {'Missing file' } {'/ExploreASL/sub-Sub1_1/ASL_1/ASL4Dcontext_Source.tsv' }
{'Siemens_PASL_2DEPI_VB15A_ADNI2_941_S_4764_1' } {'derivatives' } {'Missing file' } {'/ExploreASL/sub-Sub1_1/ASL_1/M0.json' }
{'Siemens_PASL_2DEPI_VB15A_ADNI2_941_S_4764_1' } {'derivatives' } {'Missing file' } {'/ExploreASL/sub-Sub1_1/ASL_1/M0.nii.gz' }
{'Siemens_PASL_2DEPI_VB15A_ADNI2_941_S_4764_1' } {'derivatives' } {'Missing file' } {'/ExploreASL/sub-Sub1_1/FLAIR.json' }
{'Siemens_PASL_2DEPI_VB15A_ADNI2_941_S_4764_1' } {'derivatives' } {'Missing file' } {'/ExploreASL/sub-Sub1_1/FLAIR.nii.gz' }
{'Siemens_PASL_2DEPI_VB15A_ADNI2_941_S_4764_1' } {'derivatives' } {'Missing file' } {'/ExploreASL/sub-Sub1_1/T1.json' }
{'Siemens_PASL_2DEPI_VB15A_ADNI2_941_S_4764_1' } {'derivatives' } {'Missing file' } {'/ExploreASL/sub-Sub1_1/T1.nii.gz' }
{'Data' } {'mean_qCBF_TotalGM'} {'median_qCBF_TotalGM'} {'median_qCBF_DeepWM'} {'CoV_qCBF_TotalGM'} {'GMvol' } {'WMvol' } {'CSFvol'} {'PipelineCompleted'} {'TC_ASL_Registration'} {'TC_M0_Registration'}
{'GE_3Dspiral_T1prefilled_Cyst…'} {'65.094' } {'52.5562' } {'32.2689' } {'0.29578' } {[0.6399]} {[0.5052]} {[0.4329]} {[ 1]} {[ 0.8998]} {[ 0.9321]}
{'Philips_2DEPI_FEAST_Longitud…'} {'39.5495' } {'27.5973' } {'6.6213' } {'0.71024' } {[0.5349]} {[0.4590]} {[0.4056]} {[ 1]} {[ 0.7291]} {[ 0.8170]}
{'Philips_2DEPI_FLAIR_Disabled…'} {'73.8912' } {'56.3172' } {'23.055' } {'0.33702' } {[0.5442]} {[0.3921]} {[0.3564]} {[ 1]} {[ 0.9195]} {[ 0.9479]}
{'Philips_2DEPI_FLAIR_Segm_PWI…'} {'48.7977' } {'43.2525' } {'20.1293' } {'0.42119' } {[0.6994]} {[0.5816]} {[0.2222]} {[ 1]} {[ 0.8130]} {[ 0.8346]}
{'Philips_2DEPI_Lesion_NoFLAIR…'} {'empty' } {'14.172' } {'2.9897' } {'0.89531' } {[0.7099]} {[0.5136]} {[0.1939]} {[ 1]} {[ 0.7593]} {[ 0.8910]}
{'Philips_2DEPI_Segmentation_2…'} {'45.3768' } {'39.6839' } {'10.5861' } {'0.32242' } {[0.7547]} {[0.4862]} {[0.1671]} {[ 1]} {[ 0.8592]} {[ 0.8105]}
{'Philips_3DGRASE_FLAIR_M0_2nd…'} {'34.509' } {'25.7327' } {'7.5753' } {'0.64092' } {[0.5709]} {[0.5279]} {[0.4220]} {[ 1]} {[ 0.8597]} {[ 0.7545]}
{'Philips_3DGRASE_MultiSession…'} {'33.0357' } {'25.0264' } {'9.1691' } {'0.43047' } {[0.7239]} {[0.5520]} {[0.3564]} {[ 1]} {[ 0.8477]} {[ 0.8952]}
{'Siemens3DGRASE_Structural_Al…'} {'empty' } {'empty' } {'empty' } {'empty' } {[0.5191]} {[0.4658]} {[0.4054]} {[ 1]} {0×0 double } {0×0 double }
{'Siemens_2DEPI_noBsup_FLAIR_LoQ'} {'68.6563' } {'51.5917' } {'13.8923' } {'0.32113' } {[0.6887]} {[0.6031]} {[0.3101]} {[ 1]} {[ 0.8726]} {[ 0.9589]}
Description
Various bugs are uncovered and fixed while running the full scale testing of import/processing/UT.
Tasks
lineNumberIncorrectLength
Release notes
General bugfixing ExploreASL.