Upgrade to TRAPI 1.4 - Githubissues

ExposuresProvider / cam-kp-api

Web service API for the NCATS Data Translator CAM-KP

MIT License

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Upgrade to TRAPI 1.4 #632

Open gaurav opened 1 year ago

gaurav commented 1 year ago

TRAPI 1.4 hasn't come out yet, but it will, and then we'll need to support it. It is apparently quite a large set of changes. The Changelog is currently being developed at https://github.com/NCATSTranslator/ReasonerAPI/pull/397

gaurav commented 1 year ago

Migration and Implementation Guide is at https://github.com/NCATSTranslator/ReasonerAPI/blob/c22019745aa25781f54b4bef1f61d4c07931d5d8/MigrationAndImplementationGuide1-4.md

gaurav commented 1 year ago

Migration and Implementation Guide is at https://github.com/NCATSTranslator/ReasonerAPI/blob/c22019745aa25781f54b4bef1f61d4c07931d5d8/MigrationAndImplementationGuide1-4.md

Main changes:

[ ] Auxiliary graphs (doesn't really apply to CAM-KP afaict)
[ ] Results changing dramatically:
- [ ] Edge bindings replaced by "analysis objects"
- [ ] A simple analysis object (like most CAM-KP results) will have edge bindings and (optionally) a score
- [ ] A more complex analysis object can reference auxiliary graphs that provide evidence (don't think we'll ever need it?)

gaurav commented 1 year ago

After discussing with @balhoff, we realized that we could potentially use auxiliary graphs in a number of different ways with CAM-KP:

As a way to provide an expansion of mechanism for edges.
As a way of including the entire CAM (although this would probably be too much and unnecessary information).
As a way of providing additional explanatory information for an edge.