ExposuresProvider / cam-pipeline

Data loading pipeline for CAM database
https://exposuresprovider.github.io/cam-pipeline/
MIT License
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Make branch kg-tsv run on Sterling #100

Closed gaurav closed 1 year ago

gaurav commented 1 year ago

This PR collects some changes needed to make kg-tsv run on Sterling:

Also some general updates:

With these settings, I was able to set up a debug-cam-database pod on Sterling that I could run make kg.tsv in to obtain a kg.tsv file that consisted of 1,605,400 triples.

WIP: should be merged after PR https://github.com/ExposuresProvider/cam-pipeline/pull/97 and once https://github.com/obophenotype/ncbitaxon/issues/76 has been fixed.

gaurav commented 1 year ago

I've confirmed that the two changes worked, and produces a kg.tsv with 1,605,400 rows in it.