Closed gaurav closed 1 year ago
This PR collects some changes needed to make kg-tsv run on Sterling:
Also some general updates:
With these settings, I was able to set up a debug-cam-database pod on Sterling that I could run make kg.tsv in to obtain a kg.tsv file that consisted of 1,605,400 triples.
debug-cam-database
make kg.tsv
WIP: should be merged after PR https://github.com/ExposuresProvider/cam-pipeline/pull/97 and once https://github.com/obophenotype/ncbitaxon/issues/76 has been fixed.
I've confirmed that the two changes worked, and produces a kg.tsv with 1,605,400 rows in it.
This PR collects some changes needed to make kg-tsv run on Sterling:
Also some general updates:
With these settings, I was able to set up a
debug-cam-database
pod on Sterling that I could runmake kg.tsv
in to obtain a kg.tsv file that consisted of 1,605,400 triples.WIP: should be merged after PR https://github.com/ExposuresProvider/cam-pipeline/pull/97 and once https://github.com/obophenotype/ncbitaxon/issues/76 has been fixed.