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ExposuresProvider / cam-pipeline

Data loading pipeline for CAM database
https://exposuresprovider.github.io/cam-pipeline/
MIT License
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create workflow step to assert any Uniprot identifier is subclass of protein #31

Closed balhoff closed 3 years ago

balhoff commented 3 years ago

We can use a SPARQL construct to query the loaded models for Uniprot ids and just inject a subclass of relation to protein. This is a workaround for https://github.com/geneontology/noctua/issues/693.

balhoff commented 3 years ago

Next step here is to add a target to the makefile, similar to https://github.com/NCATS-Tangerine/cam-pipeline/blob/9fe96bf0cfd4d9795501ff2f672f378adb4cb154/Makefile#L31-L32

and then merge the turtle file into ontologies-merged.ttl.

rajshruti18 commented 3 years ago

Next step here is to add a target to the makefile, similar to

https://github.com/NCATS-Tangerine/cam-pipeline/blob/9fe96bf0cfd4d9795501ff2f672f378adb4cb154/Makefile#L31-L32

and then merge the turtle file into ontologies-merged.ttl.

@balhoff Done! https://github.com/NCATS-Tangerine/cam-pipeline/pull/33

balhoff commented 3 years ago

Great, thank you.