ExposuresProvider / cam-pipeline

Data loading pipeline for CAM database
https://exposuresprovider.github.io/cam-pipeline/
MIT License
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add Gene category for NCBI genes used in mapping rules #59

Closed balhoff closed 3 years ago

balhoff commented 3 years ago

Currently the SPARQL construct that adds the Gene class to NCBI genes doesn't have the right input, so nothing is created. We should change the ncbi-gene-classes.ttl target to require only the uniprot-to-ncbi-rules.ofn as input. Load this file using ROBOT and then use the query command to run the SPARQL construct in construct-ncbi-gene-classes.rq. That query should be changed to allow any predicate, not just rdf:type.