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ExposuresProvider / cam-pipeline

Data loading pipeline for CAM database
https://exposuresprovider.github.io/cam-pipeline/
MIT License
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map RO terms to qualified Biolink predicates #95

Open balhoff opened 1 year ago

balhoff commented 1 year ago

We can bring in additional relation mappings through these qualified predicates: https://github.com/biolink/biolink-model/blob/master/predicate_mapping.yaml

First, we need to generate a TSV from that YAML file that has columns identical to https://github.com/ExposuresProvider/cam-pipeline/blob/kg-tsv/ro-to-biolink-local-mappings.tsv, with the addition of one more column containing some kind of structured qualifier information. We'll use that generated TSV in Souffle kg script.

gaurav commented 11 months ago

I was trying to figure out what the definitive list of possible qualifier types were, and Sierra gave me a link to the full list at today's TAQA call: https://github.com/biolink/biolink-model/blob/6d872a37c923ae0cd09e8b9de83533f34f98943a/biolink-model.yaml#L10807

gaurav commented 8 months ago

I think this is done in https://github.com/ExposuresProvider/cam-pipeline/issues/95 -- @balhoff please let me know if there's any functionality missing?