ExpressionAnalysis / STAR-SEQR

RNA Fusion Detection and Quantification
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networkx version incompatibility #17

Open jasper1918 opened 6 years ago

jasper1918 commented 6 years ago

The latest networkx2.1rc1 version renames several functions.

Specifically:

    adj_mat = nx.to_pandas_dataframe(node_graph)
AttributeError: 'module' object has no attribute 'to_pandas_dataframe'

The function is now called to_pandas_adjacency per: https://github.com/networkx/networkx/pull/2811

Either specify a version in the install or handle dynamically in the script.