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ExpressionAnalysis / STAR-SEQR

RNA Fusion Detection and Quantification
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Error: salmon quant failed #24

Closed yeswzc closed 4 years ago

yeswzc commented 4 years ago

H, I am using STAR-SEQR with specified -ss SAM and -sj Juncion files, but I get the error below:

/usr/local/Anaconda/envs/py2.7/lib/python2.7/site-packages/pandas/core/groupby/generic.py:1315: FutureWarning: using a dict with renaming is deprecated and will be removed in a future version return super(DataFrameGroupBy, self).aggregate(arg, *args, **kwargs) 2020-05-14 15:07 - ERROR - Error: salmon quant failed None

Do anyone know how to solve this?

Thank you!

yeswzc commented 4 years ago

Use lower version of salmon, e.g. salmon/0.9.1, can solve the problem. Thanks.