Open GACGAMA opened 3 years ago
Hello! I've been trying to run STARSEQR with reads already aligned (with options for arriba, star-fusion and STARSEQR). When running with the following options:
starseqr.py -sb -sj -p -t 8 -g -r --v or starseqr.py -sj -sb -p -t 8 -g -r --v or starseqr.py -sb -p -t 8 -g -r --v I'm always getting:
starseqr.py -sb -sj -p -t 8 -g -r --v
starseqr.py -sj -sb -p -t 8 -g -r --v
starseqr.py -sb -p -t 8 -g -r --v
starseqr.py: error: the following arguments are required: -1/--fastq1, -2/--fastq2
How can I run the fusion caller only with bam files and chimeric junctions?
Hello! I've been trying to run STARSEQR with reads already aligned (with options for arriba, star-fusion and STARSEQR). When running with the following options:
starseqr.py -sb -sj -p -t 8 -g -r --vorstarseqr.py -sj -sb -p -t 8 -g -r --vorstarseqr.py -sb -p -t 8 -g -r --vI'm always getting:starseqr.py: error: the following arguments are required: -1/--fastq1, -2/--fastq2How can I run the fusion caller only with bam files and chimeric junctions?