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ExpressionAnalysis / STAR-SEQR

RNA Fusion Detection and Quantification
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homology #3

Closed jasper1918 closed 7 years ago

jasper1918 commented 7 years ago

Reads mapping to homologous genes is an issue causing most false-positives currently. Either pre-populate a list or use blast, kmer, other alignment approaches to identify homologous regions to flag and remove support reads.

jasper1918 commented 7 years ago

Now doing cross-alignment on reads from one gene partner to the next.