Closed jasper1918 closed 7 years ago
Reads mapping to homologous genes is an issue causing most false-positives currently. Either pre-populate a list or use blast, kmer, other alignment approaches to identify homologous regions to flag and remove support reads.
Now doing cross-alignment on reads from one gene partner to the next.
Reads mapping to homologous genes is an issue causing most false-positives currently. Either pre-populate a list or use blast, kmer, other alignment approaches to identify homologous regions to flag and remove support reads.