Open arichards2564 opened 2 years ago
https://github.com/ExpressionAnalysis/STAR-SEQR/blob/8889bc879c647c2174c37ee4a69a27626814c22b/starseqr.py#L443-L446
I'm trying to use a pre-aligned bam and it errors here because it looks for sam file that doesn't exist. I believe this is a mistake. Do I need to have both the sam and bam file available?
https://github.com/ExpressionAnalysis/STAR-SEQR/blob/8889bc879c647c2174c37ee4a69a27626814c22b/starseqr.py#L443-L446
I'm trying to use a pre-aligned bam and it errors here because it looks for sam file that doesn't exist. I believe this is a mistake. Do I need to have both the sam and bam file available?