Open anoronh4 opened 1 year ago
Hello,
did you please solve this issue? I have the same problem (even with latest version of STAR - 2.7.11a)
2024-03-15 15:01 - ERROR - b'\nEXITING because of fatal PARAMETER error: --outSAMattributes contains ch tag, which requires BAM output.\nSOLUTION: re-run STAR with --outSAMtype BAM Unsorted (and/or) SortedByCoordinate option, or without ch tag in --outSAMattributes\n\nMar 15 15:01:07 ...... FATAL ERROR, exiting\n'
2024-03-15 15:01 - ERROR - Error: STAR failed
Best,
Paul
I am running STAR-SEQR from the fastqs and getting this error:
My version of STAR is 2.7.9a. Seems like STAR doesn't like
--outSAMattributes
to containch
when--outSAMtype None
is specified (but i would think it doesn't like any outSAMattributes when not producing a bam). just wondering what's the best way to deal with this or if there's any plans to update STAR-SEQR to work with newer versions of STAR.