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ExpressionAnalysis / STAR-SEQR

RNA Fusion Detection and Quantification
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Fusion Quantification #5

Closed jasper1918 closed 7 years ago

jasper1918 commented 7 years ago

Apart from using the number of reads supporting a fusion, it would be good to have a better sense of the ratio of the fusion to the two gene partners. RSEM would be ideal but other approaches are still being considered.

jasper1918 commented 7 years ago

Now uses salmon with all reference transcripts and chimeric transcripts.