Unlikely to have caused problems in current usage - regular notebook workflow doesn't initiate a refinement from a TensorMap with more than one z layer (z stacking comes later). In the previous code, mi was always 0, because recon_index_to_map (correctly) defaults to a 2D slice. We should be checking the self.phase_ids phase mask at the user-supplied z_layer value rather than 0.
Unlikely to have caused problems in current usage - regular notebook workflow doesn't initiate a refinement from a TensorMap with more than one z layer (z stacking comes later). In the previous code,
miwas always 0, becauserecon_index_to_map(correctly) defaults to a 2D slice. We should be checking theself.phase_idsphase mask at the user-suppliedz_layervalue rather than 0.