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FAIR-bioHeaders / FHR-File-Converter

A file converter and validator for the FHR header and its serializations.
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assembly bioinformatics details #18

Open Woolly-at-EBI opened 1 month ago

Woolly-at-EBI commented 1 month ago

Please could there metadata support for more bioinformatics detail outwith the name of the software, e.g. what version and command line options, what wider bioinformatics protocol was this part of etc. Thanks, Peter

molikd commented 1 month ago

Hmm, interesting thought, we used to have an assemblySoftware field, I think this could turn into a list of objects:

"assemblySoftware": {
      "type": "array",
      "description": "Software used in assembly",
      "items": {
            "type": "object",
            "name": "string",
            "uri": "uri",
            "version": "string",
            "commandLineOption": {
                  "items": {
                          "type": "string",
                          "format": "uri"
                  }
            }
      }
}

I think we'd keep all of it optional, so that you could just provide a list of names, without versions, or not provide anything at all.

molikd commented 1 month ago

Adam and I have decided to implement this.