Pynxtools as nomad plugin

domna commented 5 months ago

This PR enables pynxtools to work as nomad plugin for

[x] The metainfo schema
[x] The parsing of nexus files

Fixes #355 Fixes #354

coveralls commented 5 months ago

Pull Request Test Coverage Report for Build 9745439294

Details

29 of 29 (100.0%) changed or added relevant lines in 2 files are covered.
No unchanged relevant lines lost coverage.
Overall coverage remained the same at 96.916%

Totals
Change from base Build 9742172344:	0.0%
Covered Lines:	597
Relevant Lines:	616

Pull Request Test Coverage Report for Build 9745439294

Details

29 of 29 (100.0%) changed or added relevant lines in 2 files are covered.
No unchanged relevant lines lost coverage.
Overall coverage remained the same at 96.916%

Totals
Change from base Build 9742172344:	0.0%
Covered Lines:	597
Relevant Lines:	616

Pull Request Test Coverage Report for Build 9747281093

Details

29 of 29 (100.0%) changed or added relevant lines in 2 files are covered.
No unchanged relevant lines lost coverage.
Overall coverage remained the same at 96.916%

Totals
Change from base Build 9742172344:	0.0%
Covered Lines:	597
Relevant Lines:	616

Pull Request Test Coverage Report for Build 9747281093

Details

29 of 29 (100.0%) changed or added relevant lines in 2 files are covered.
No unchanged relevant lines lost coverage.
Overall coverage remained the same at 96.916%

Totals
Change from base Build 9742172344:	0.0%
Covered Lines:	597
Relevant Lines:	616

💛 - Coveralls

lukaspie commented 5 months ago

We should probaby update the README / docs to reflect that this is now also a full NOMAD plugin.

coveralls commented 5 months ago

Pull Request Test Coverage Report for Build 9783934174

Warning: This coverage report may be inaccurate.

This pull request's base commit is no longer the HEAD commit of its target branch. This means it includes changes from outside the original pull request, including, potentially, unrelated coverage changes.

For more information on this, see Tracking coverage changes with pull request builds.
To avoid this issue with future PRs, see these Recommended CI Configurations.
For a quick fix, rebase this PR at GitHub. Your next report should be accurate.

Details

96 of 101 (95.05%) changed or added relevant lines in 3 files are covered.
No unchanged relevant lines lost coverage.
Overall coverage decreased (-0.6%) to 96.366%

Changes Missing Coverage	Covered Lines	Changed/Added Lines	%
tests/nomad/test_parsing.py	67	72	93.06%
<!--	Total:	96	101	95.05%	-->

Totals
Change from base Build 9742172344:	-0.6%
Covered Lines:	663
Relevant Lines:	688

💛 - Coveralls

coveralls commented 5 months ago

Pull Request Test Coverage Report for Build 9783991966

Warning: This coverage report may be inaccurate.

This pull request's base commit is no longer the HEAD commit of its target branch. This means it includes changes from outside the original pull request, including, potentially, unrelated coverage changes.

For more information on this, see Tracking coverage changes with pull request builds.
To avoid this issue with future PRs, see these Recommended CI Configurations.
For a quick fix, rebase this PR at GitHub. Your next report should be accurate.

Details

99 of 104 (95.19%) changed or added relevant lines in 3 files are covered.
No unchanged relevant lines lost coverage.
Overall coverage decreased (-0.5%) to 96.382%

Changes Missing Coverage	Covered Lines	Changed/Added Lines	%
tests/nomad/test_parsing.py	70	75	93.33%
<!--	Total:	99	104	95.19%	-->

Totals
Change from base Build 9742172344:	-0.5%
Covered Lines:	666
Relevant Lines:	691

💛 - Coveralls

coveralls commented 5 months ago

Pull Request Test Coverage Report for Build 9784063398

Warning: This coverage report may be inaccurate.

This pull request's base commit is no longer the HEAD commit of its target branch. This means it includes changes from outside the original pull request, including, potentially, unrelated coverage changes.

For more information on this, see Tracking coverage changes with pull request builds.
To avoid this issue with future PRs, see these Recommended CI Configurations.
For a quick fix, rebase this PR at GitHub. Your next report should be accurate.

Details

33 of 104 (31.73%) changed or added relevant lines in 3 files are covered.
No unchanged relevant lines lost coverage.
Overall coverage decreased (-10.2%) to 86.686%

Changes Missing Coverage	Covered Lines	Changed/Added Lines	%
tests/nomad/test_parsing.py	4	75	5.33%
<!--	Total:	33	104	31.73%	-->

Totals
Change from base Build 9742172344:	-10.2%
Covered Lines:	599
Relevant Lines:	691

💛 - Coveralls

coveralls commented 5 months ago

Pull Request Test Coverage Report for Build 9789545188

Warning: This coverage report may be inaccurate.

This pull request's base commit is no longer the HEAD commit of its target branch. This means it includes changes from outside the original pull request, including, potentially, unrelated coverage changes.

For more information on this, see Tracking coverage changes with pull request builds.
To avoid this issue with future PRs, see these Recommended CI Configurations.
For a quick fix, rebase this PR at GitHub. Your next report should be accurate.

Details

33 of 104 (31.73%) changed or added relevant lines in 3 files are covered.
No unchanged relevant lines lost coverage.
Overall coverage decreased (-10.2%) to 86.686%

Changes Missing Coverage	Covered Lines	Changed/Added Lines	%
tests/nomad/test_parsing.py	4	75	5.33%
<!--	Total:	33	104	31.73%	-->

Totals
Change from base Build 9742172344:	-10.2%
Covered Lines:	599
Relevant Lines:	691

💛 - Coveralls

coveralls commented 5 months ago

Pull Request Test Coverage Report for Build 9789559838

Warning: This coverage report may be inaccurate.

This pull request's base commit is no longer the HEAD commit of its target branch. This means it includes changes from outside the original pull request, including, potentially, unrelated coverage changes.

For more information on this, see Tracking coverage changes with pull request builds.
To avoid this issue with future PRs, see these Recommended CI Configurations.
For a quick fix, rebase this PR at GitHub. Your next report should be accurate.

Details

33 of 104 (31.73%) changed or added relevant lines in 3 files are covered.
No unchanged relevant lines lost coverage.
Overall coverage decreased (-10.2%) to 86.686%

Changes Missing Coverage	Covered Lines	Changed/Added Lines	%
tests/nomad/test_parsing.py	4	75	5.33%
<!--	Total:	33	104	31.73%	-->

Totals
Change from base Build 9742172344:	-10.2%
Covered Lines:	599
Relevant Lines:	691

💛 - Coveralls

coveralls commented 5 months ago

Pull Request Test Coverage Report for Build 9789581705

Warning: This coverage report may be inaccurate.

This pull request's base commit is no longer the HEAD commit of its target branch. This means it includes changes from outside the original pull request, including, potentially, unrelated coverage changes.

For more information on this, see Tracking coverage changes with pull request builds.
To avoid this issue with future PRs, see these Recommended CI Configurations.
For a quick fix, rebase this PR at GitHub. Your next report should be accurate.

Details

33 of 104 (31.73%) changed or added relevant lines in 3 files are covered.
No unchanged relevant lines lost coverage.
Overall coverage decreased (-10.2%) to 86.686%

Changes Missing Coverage	Covered Lines	Changed/Added Lines	%
tests/nomad/test_parsing.py	4	75	5.33%
<!--	Total:	33	104	31.73%	-->

Totals
Change from base Build 9742172344:	-10.2%
Covered Lines:	599
Relevant Lines:	691

FAIRmat-NFDI / pynxtools