FAIRplus / FAIRPlus_squad2

an internal issue tracker (=todo list) for Squad team 2
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UC6 - Ontology recommendation animal models #56

Closed mcourtot closed 4 years ago

mcourtot commented 5 years ago

We’ve been asked to provide some guidance on how to describe animal models used in an in vivo study. We’ve thought about different approaches ranging from a big compositional model to simply collecting the terms for each component part, for example: A mouse (species) with a particular strain (could be described by MGI nomenclature: http://www.informatics.jax.org/mgihome/nomen/ and normalizing to other terminologies like “gene” modified, “disease” represented by the model and an observed “phenotype”

Simple would be best, we would prefer a simple “minimal” standard (or set of standards) that many people could use across many different in vivo labs.

Owner: Dorothy Reilly (dorothy.reilly@novartis.com)