FAIRplus / WP3_FAIR_tooling

Supporting user journey through FAIRification by identifying and connecting relevant recipes and tools
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add reference ontology annotation tools from Kurt #21

Open FuqiX opened 3 years ago

FuqiX commented 3 years ago

required by #27 Ping Sukhi once finished so that he could add to the summary list

These are the tools we are currently using at BI from my knowledge:

Data Catalogue
    Collibra - registering data on enterprise level for data sharing, data lineage, …
                     Base FAIR data catalogue
    An advanced FAIR+ data catalogue we plan to setup as Enterprise Knowledge graph in the triple store database
    for areas where according use cases exist

Schema modelling
    Innovator from MID company for UML enterprise model
    - Interfaces to Collibra to use the modelling information for classification in the enterprise cataloge
    - Generate schema ontologies consistent with the UML enterprise model
ETL tools
    Standard product is Informatica – it supports relational technology no semantic technology
    relational harmonization of data
    We also used Talend in the Big Data environment
Semantic
    Pool Party – for maintaining SKOS ontologies
    Stardog – Triple Store Database
                      Provide an enterprise knowledge graph as FAIR+ data catalogue
    Metaphacts – Visualization of Knowledge Graphs
Ontology Editors
    Protégé
    VocBench

Unstructured Text Processing
    OC processor from Ontochem
    Prodigy · An annotation tool for AI, Machine Learning & NLP  https://prodi.gy
    SOLR – create search indexes
    Spacy – Entity name recognition spaCy · Industrial-strength Natural Language Processing in Python
FuqiX commented 3 years ago

27 check 27

FuqiX commented 3 years ago

https://github.com/FAIRplus/WP3_FAIR_tooling/blob/main/tool_discovery/outputs/ETL_tools_list_curated.csv

https://github.com/FAIRplus/WP3_FAIR_tooling/blob/main/tool_discovery/outputs/ontology_annotation_tools_list.csv